Job Description P28631 Confidence 99.94% Date Thu Jan 5 11:45:02 GMT 2012 Rank 12 Aligned Residues 298 % Identity 18% Template c1sxjD_ PDB info PDB header:replication Chain: D: PDB Molecule:activator 1 41 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G	K	N
Query Conservation
Alig confidence																					.																																																		.	.	.	.	.	.	.	.	.
Template Conservation																					.																																																		.	.	.	.	.	.	.	.	.
Template Sequence		Q	D	H	A	V	T	V	L	K	K	T	L	K	S	A	N	L	P	H	.	M	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	L	A	L	T	K	E	L	Y	G	P	D	L	M	K	S	R	I	L	E	L	N	A	S	D	E	R	G	I	S	I	V	R	E	K	.	.	.	.	.	.	.	.	.	V	K
Template Known Secondary structure				T	T								T	T		T	T				.						S	T	T	S	S																			T	T	S						S	S	S								T	T		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.																																																		.	.	.	.	.	.	.	.	.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.										110	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	V	V	W	V	T	D	A	A	L	L	T	D	A	A	A	N	A	L	L	K	T	L	E	E	P	P	A	E	T	W	F	F	L	A	T	R	E	P	E	R	L	L	A	T	L	R	S	R	C	R	L	H	Y	L	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	F	A	R	L	T	V	S	K	P	S	K	H	D	L	E	N	Y	P	C	P	P	Y	K	I	I	I	L	D	E	A	D	S	M	T	A	D	A	Q	S	A	L	R	R	T	M	E	T	Y	S	G	V	T	R	F	C	L	I	C	N	Y	V	T	R	I	I	D	P	L	A	S	Q	C	S	K	F	R	F	K	A
Template Known Secondary structure						S							T	T					S				S							T	T	G	G	G	S															T	T	T	T								S		G	G	G	S								S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		167	.	.	170	.	.	.	.	.	.						.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.										.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure												.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Query Sequence		P	P	E	Q	Y	A	V	T	W	L	.	.	.	.	.	S	R	E	V	T	M	S	Q	D	A	L	L	A	A	L	R	L	S	A	G	S	P	G	A	A	L	A	L	F	Q	G	D	N	W	Q	A	R	E	.	.	.	.	.	.	.	.	.	T	L	C	Q	A	L	A	Y	S	V	P	S	G	D	W	Y	S	L
Query Conservation												.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	A	S	N	A	I	D	R	L	R	F	I	S	E	Q	E	N	V	K	C	D	D	G	V	L	E	R	I	L	D	I	S	A	G	D	L	R	R	G	I	T	L	L	Q	S	A	S	K	G	A	Q	Y	L	G	D	G	K	N	I	T	S	T	Q	V	E	E	L	A	G	V	V	P	H	D	I	L	I	E	I
Template Known Secondary structure																	T	T	T															T	S	S												T									S														T				S
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	L	N	H	E	Q	A	P	A	R	L	H	W	L	A	T	L	L	M	D	A	L	K	R	H	H	G	A	A	Q	V	T	N	V	D	V	P	G	L	V	A	E	L	A	N	H	L	S	P	S	R	L	Q	A	I	L	G	D	V	C	H	I	R	E	Q	L	M	S	V	T	G	I	N	R	E	L	L	I
Query Conservation
Alig confidence																							.	.	.	.	.	.																																												.	.
Template Conservation																							.	.	.	.	.	.																																												.	.
Template Sequence		V	E	K	V	K	S	G	D	F	D	E	I	K	K	Y	V	N	T	F	M	K	.	.	.	.	.	.	S	G	W	S	A	A	S	V	V	N	Q	L	H	E	Y	Y	I	T	N	D	N	F	D	T	N	F	K	N	Q	I	S	W	L	L	F	T	T	D	S	R	L	N	N	.	.	G	T	N	E	H	I	Q	L
Template Known Secondary structure							S																.	.	.	.	.	.	T	S				T	T													S	S	S																				T	T	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.																																												.	.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.							.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.			.	.	.	.	340	.	.	.
		313	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	L	L	L	R	I	E	H	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	L	L	V	K	I	S	Q	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		344	.	.	.	.	.	350	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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