Job Description P28631 Confidence 99.94% Date Thu Jan 5 11:45:02 GMT 2012 Rank 10 Aligned Residues 288 % Identity 19% Template c1sxjC_ PDB info PDB header:replication Chain: C: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G	K	N
Query Conservation
Alig confidence																					.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.
Template Conservation																					.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.
Template Sequence		Q	N	E	V	I	T	T	V	R	K	F	V	D	E	G	K	L	P	H	.	L	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	V	A	L	A	R	E	I	Y	G	K	N	Y	S	N	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	E	L	.	.	.	N	A	S	D
Template Known Secondary structure															T	T					.						S	S	S	S	S														T	T	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.		T	T	S
Template Predicted Secondary structure																					.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.																				.	80	.	.				.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		T	L	G	V	D	A	V	R	E	V	T	E	K	L	.	.	N	E	H	A	R	L	G	G	A	K	V	V	W	V	T	D	A	A	L	L	T	D	A	A	A	N	A	L	L	K	T	L	E	E	P	P	A	E	T	W	F	F	L	A	T	R	E	P	E	R	L	L	A	T	L	R	S	R	C	R	L	H	Y	L
Query Conservation																.	.
Alig confidence																.	.
Template Conservation
Template Sequence		D	R	G	I	D	V	V	R	N	Q	I	K	D	F	A	S	T	R	Q	I	F	S	K	G	F	K	L	I	I	L	D	E	A	D	A	M	T	N	A	A	Q	N	A	L	R	R	V	I	E	R	Y	T	K	N	T	R	F	C	V	L	A	N	Y	A	H	K	L	T	P	A	L	L	S	Q	C	T	R	F	R	F
Template Known Secondary structure				S						T								S			S	S	S		S							T	T	G	G	G	S															T	T	T	T								S		G	G	G	S						T	T	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.						.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.									.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure														.	.	.	.	.																																						.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.																																						.	.	.	.	.	.	.	.
Query Sequence		A	P	P	P	E	Q	Y	A	V	T	W	L	.	.	.	.	.	S	R	E	V	T	M	S	Q	D	A	L	L	A	A	L	R	L	S	A	G	S	P	G	A	A	L	A	L	F	Q	G	D	N	W	Q	A	R	.	.	.	.	.	.	.	.	E	T	L	C	Q	A	L	A	Y	S	V	P	S	G	D	W	Y	S
Query Conservation														.	.	.	.	.																																						.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	P	L	P	Q	E	A	I	E	R	R	I	A	N	V	L	V	H	E	K	L	K	L	S	P	N	A	E	K	A	L	I	E	L	S	N	G	D	M	R	R	V	L	N	V	L	Q	S	C	K	A	T	L	D	N	P	D	E	D	E	I	S	D	D	V	I	Y	E	C	C	G	A	P	R	P	S	D	L	K	A
Template Known Secondary structure																			T	T	T			B													T	T									T	T	T	T	T	T	T	T		S	S	S				B									T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	A	L	N	H	E	Q	A	P	A	R	L	H	W	L	A	T	L	L	M	D	A	L	K	R	H	H	G	A	A	Q	V	T	N	V	D	V	P	G	L	V	A	E	L	A	N	H	L	S	P	S	R	L	Q	A	I	L	G	D	V	C	H	I	R	E	Q	L	M	S	V	T	G	I	N	R	E	L	L
Query Conservation
Alig confidence																									.	.	.	.	.																																												.	.
Template Conservation																									.	.	.	.	.																																												.	.
Template Sequence		V	L	K	S	I	L	E	D	D	W	G	T	A	H	Y	T	L	N	K	V	R	S	A	.	.	.	.	.	K	G	L	A	L	I	D	L	I	E	G	I	V	K	I	L	E	D	Y	E	L	Q	N	E	E	T	R	V	H	L	L	T	K	L	A	D	I	E	Y	S	I	S	K	.	.	G	G	N	D	Q	I	Q
Template Known Secondary structure								T	S															T	.	.	.	.	.	T	T															T	T	S			S	S																			T	T	.	.
Template Predicted Secondary structure																									.	.	.	.	.																																												.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.						270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.			.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	D	L	L	L	R	I	E	H	Y	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	S	A	V	I	G	A	I	K	A	S	F	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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