Job Description P28631 Confidence 98.83% Date Thu Jan 5 11:45:02 GMT 2012 Rank 82 Aligned Residues 184 % Identity 15% Template c1ojlF_ PDB info PDB header:response regulator Chain: F: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding Resolution 3.0 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	.	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G	K
Query Conservation																.
Alig confidence																.
Template Conservation
Template Sequence		S	S	P	A	M	Q	H	L	L	N	E	I	A	M	V	A	P	S	D	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	L	H	A	C	S	A	R	S	D	R	P	L	V	T	L	N	C	A	A	L	N	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	K	R	R	E
Template Known Secondary structure																		S	T	T									T	T	S	S												S	S		S	S	S								T	T											T				S	S	S
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.												.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Query Sequence		N	T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	V	V	W	V	T	D	A	A	L	L	T	D	A	A	A	N	A	L	L	K	T	L	E	E	P	P	.	.	.	.	.	.	.	.	.	.	.	A	E	T	W	F	F	L	A	T	R	E	P	E	.	.	.	.	.
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	R	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	D	G	G	T	L	F	L	D	E	I	G	D	I	S	P	L	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	S	N	Q	T	I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	E	E	V	S
Template Known Secondary structure			T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T	T	S							G	G	G															S	S					S	S	S															S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		227	.	.	230																	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
				150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure		.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query SS confidence		.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Query Sequence		.	.	R	L	L	A	T	L	R	S	R	C	R	L	H	Y	L	A	P	P	P	E	Q	Y	A	V	T	W	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	E	V	T	M	S	Q	D	A	L	L	A	A	L	R	L	S	.	A	G	S	P	G	A	A	L	A	L	F	Q
Query Conservation		.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Alig confidence		.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation
Template Sequence		A	G	R	F	R	Q	D	L	Y	Y	R	L	N	V	V	A	I	E	M	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	D	H	F	L	R	R	F	A	E	R	N	R	K	V	V	K	G	F	T	P	Q	A	M	D	L	L	I	H	Y	D	W	P	G	N	I	R	E	L	E	N	A	I	E
Template Known Secondary structure			T	S	S										S								G	G	G	G	G	G	G																T	T						B														T	T
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions