Job Description P76115 Confidence 2.84% Date Thu Jan 5 12:19:07 GMT 2012 Rank 86 Aligned Residues 155 % Identity 15% Template c2y0kA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:pyroglutatmate porin opdo; PDBTitle: crystal structure of pseudomonas aeruginosa opdo Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	F	Q	T	D	T	D	D	E	I	V	V	D	S	S	S	G	G	R	T	T	Y	K	N	A	G	K	T	R	R	Q	G	A	E	L	A	W	D	Q	R	F	A	G	D	F	R	V	N	A	S	W	T	W	L	D	A	T	Y	R	S	N	V	C	N	E	Q	D	C	N	G	N	R	M	P	G	I	A	R
Query Conservation
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	L	R	G	A	H	L	D	R	N	K	L	N	S	S	S	D	Y	Q	V	F	S	A	N	R	I	G	G	R	S	D	A	F	D	F	A	G	G	D	Y	R	L	T	P	A	L	T	A	S	L	H	Q	G	R	L	K	D	I	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															T	T		S	S		B					T	T	T					S											S	S	S	S											T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		596	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.							.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.
Query Sequence		N	M	G	F	A	S	I	G	Y	V	P	E	D	G	W	Y	A	G	T	E	A	R	Y	M	G	D	I	M	A	D	D	E	N	T	A	K	A	P	S	Y	T	L	V	G	L	F	T	G	Y	K	Y	N	Y	H	N	L	T	V	D	L	F	G	R	V	D	N	L	F	D	K	E	Y	.	.	.	.	.	.	V	G
Query Conservation																																																																										.	.	.	.	.	.
Alig confidence		.																																					.	.	.														.	.	.	.																.	.	.	.	.	.
Template Conservation		.																																					.	.	.														.	.	.	.
Template Sequence		.	Q	T	F	A	G	L	V	H	T	L	D	L	G	R	S	L	K	S	D	L	R	F	A	R	A	S	E	D	G	G	F	R	E	L	D	N	.	.	.	R	A	F	G	A	L	F	S	L	R	L	G	A	.	.	.	.	H	A	V	A	A	G	Y	Q	R	I	S	G	D	D	P	Y	P	Y	I	A	G	S	D
Template Known Secondary structure		.																													T	T	S						.	.	.												T	T	.	.	.	.												S	S	S					B	T	T	S
Template Predicted Secondary structure		.																																					.	.	.														.	.	.	.
Template SS confidence
			203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	I	V	N	E	S	N	G	R	Y	Y	E	P	S	P	G	R	N	Y	G	V	G	M	N	I	A	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Y	L	V	N	F	I	Q	I	G	D	F	G	N	V	D	E	R	S	W	Q	L	R	Y	D	Y	D	F
Template Known Secondary structure					T	T			S	S					S	T	T
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions