Job Description P76115 Confidence 4.73% Date Thu Jan 5 12:19:07 GMT 2012 Rank 54 Aligned Residues 205 % Identity 9% Template c2y0hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable porin; PDBTitle: crystal structure of pseudomonas aeruginosa opdl Resolution 2.20 Å

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		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	A	A	G	R	G	F	E	T	P	T	I	N	E	L	S	Y	R	A	D	G	Q	S	G	M	N	L	G	L	K	P	S	T	N	D	T	I	E	I	G	S	K	T	R	I	G	D	G	L	L	S	L	A	L	F	Q	T	D	T	D	D	E	I	V	V	D	S	S	S	G	G	R	T	T	Y	K	N	A	G
Query Conservation
Alig confidence																																													.																.	.	.	.	.
Template Conservation																																													.																.	.	.	.	.
Template Sequence		T	A	K	L	R	Y	S	Q	T	Q	L	Q	V	G	I	L	M	P	Q	L	P	V	A	F	R	D	D	V	R	L	L	P	Q	T	F	D	G	A	L	L	T	S	S	.	E	I	E	G	L	T	L	T	A	G	Q	L	W	K	S	.	.	.	.	.	R	T	R	E	S	D	D	M	Y	I	M	G	R	D	K	A
Template Known Secondary structure								T	T													T	T						S	S	S	S													.		S	T	T												.	.	.	.	.								B		B	T	T	S		T	T
Template Predicted Secondary structure																																													.																.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	R	R	Q	G	A	E	L	A	W	D	Q	R	F	A	G	D	F	R	V	N	A	S	W	T	W	L	D	A	T	Y	R	S	N	V	C	N	E	Q	D	C	N	G	N	R	M	P	G	I	A	R	N	M	G	F	A	S	I	G	Y	V	P	E	D	G	W	Y	A	G	T	E	A	R	Y	M	G	D	I	M
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	A	S	D	E	F	N	L	A	G	A	T	Y	A	F	T	P	R	L	S	A	S	Y	Y	Y	G	Q	L	K	D	I	Y	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Y	L	G	L	L	H	T	L	P	L	G	E	G	L	S	L	R	S	D	L	R	Y	F	D	S	G	E
Template Known Secondary structure		S		B	S											S	S	S	S											T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S	T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.																			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.								.	.	.	690	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.
Query Sequence		A	D	D	E	N	T	A	K	A	P	S	Y	T	L	V	G	L	F	T	G	Y	K	Y	N	Y	H	N	L	T	V	D	L	F	G	R	V	D	N	L	F	D	K	E	Y	V	G	S	V	I	V	N	E	S	N	G	R	Y	Y	E	P	S	P	G	.	.	.	.	.	.	.	R	N	Y	G	V	G	M	N	I	A
Query Conservation																																																																	.	.	.	.	.	.	.
Alig confidence													.														.	.	.	.																																			.	.	.	.	.	.	.
Template Conservation													.														.	.	.	.
Template Sequence		D	G	A	A	I	S	G	P	V	D	N	.	R	N	L	N	A	M	L	T	L	R	A	G	A	.	.	.	.	H	A	F	G	I	G	V	Q	K	M	I	G	N	D	A	F	P	V	L	N	G	Y	T	T	P	Y	V	A	N	L	M	A	Y	Q	T	F	T	R	P	Q	E	K	S	W	Q	L	R	Y	D	Y	D
Template Known Secondary structure			T	T		T	T						.												T	T	.	.	.	.												S	S	S					B	T	T	T		B				T	T			S	S			S		S	T	T
Template Predicted Secondary structure													.														.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.					.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		697
Predicted Secondary structure
Query SS confidence
Query Sequence		W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		310

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions