Job Description P76115 Confidence 13.34% Date Thu Jan 5 12:19:07 GMT 2012 Rank 40 Aligned Residues 161 % Identity 9% Template c2odjA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa Resolution 2.90 Å

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		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	F	Q	T	D	T	D	D	E	I	V	V	D	S	S	S	G	G	R	T	T	Y	K	N	A	G	K	T	R	R	Q	G	A	E	L	A	W	D	Q	R	F	A	G	D	F	R	V	N	A	S	W	T	W	L	D	A	T	Y	R	S	N	V	C	N	E	Q	D	C	N	G	N	R	M	P	G	I	A	R
Query Conservation
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	Q	L	Q	S	S	E	F	E	G	L	D	L	E	A	G	H	F	T	E	E	L	Y	A	T	Y	A	G	E	T	A	K	S	A	D	F	I	G	G	R	Y	A	I	T	D	N	L	S	A	S	L	Y	G	A	E	L	E	D	I	Y	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									S	T	T															T	T	T					S											S	S	S	S											T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		596	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		N	M	G	F	A	S	I	G	Y	V	P	E	D	G	W	Y	A	G	T	E	A	R	Y	M	G	D	I	M	A	D	D	E	N	T	A	K	A	P	S	Y	T	L	V	G	L	F	T	G	Y	K	Y	N	Y	H	N	L	T	V	D	L	F	G	R	V	D	N	L	F	D	K	E	Y	V	G	S	V	I	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																									.														.	.	.	.																					.	.	.
Template Conservation																																									.														.	.	.	.
Template Sequence		Y	Y	L	N	S	N	Y	T	I	P	L	A	S	D	Q	S	L	G	F	D	F	N	I	Y	R	T	N	D	E	G	K	A	K	A	G	D	I	S	N	.	T	T	W	S	L	A	A	A	Y	T	L	D	A	.	.	.	.	H	T	F	T	L	A	Y	Q	K	V	H	G	D	Q	P	F	D	Y	I	G	F	G	S
Template Known Secondary structure														T	T																T	T		S	S						.												T	T	.	.	.	.												S	S	S
Template Predicted Secondary structure																																									.														.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.					.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
					673	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	V	N	E	S	N	G	R	Y	Y	E	P	S	P	G	R	N	Y	G	V	G	M	N	I	A	W	R	F
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		I	F	L	A	N	S	V	Q	Y	S	D	F	N	G	P	G	E	K	S	W	Q	A	R	Y	D	L	N	L	A	S
Template Known Secondary structure			S	S	T	T			S	S						T	T												T	T	S
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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