Job Description P76115 Confidence 38.23% Date Thu Jan 5 12:19:07 GMT 2012 Rank 34 Aligned Residues 137 % Identity 15% Template c2k0lA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. Resolution UNK

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		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	T	R	R	Q	G	A	E	L	A	W	D	Q	R	F	A	G	D	F	R	V	N	A	S	W	T	W	L	D	A	T	Y	R	S	N	V	C	N	E	Q	D	C	N	G	N	R	M	P	G	I	A	R	N	M	G	F	A	S	I	G	Y	V	P	E	D	G	W	Y	A	G	T	E	A	R	Y	M	G	D	I
Query Conservation
Alig confidence																																																	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.
Template Sequence		T	R	N	D	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	P	Y	L	G	F	E	M	G	Y	D	W	L	G	R	M	A	Y	K	G	S	V	D	N	G	A	F	K	A	Q	G	.	.	.	.	.	.	V	Q	L	T	A	K	L	G	Y	P	I	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R
Template Known Secondary structure		S																	T	T																		S	S				S	S					.	.	.	.	.	.											S	S	S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		623	.	.	.	.	.	.	630	.	.	.	.										.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.
Query Sequence		M	A	D	D	E	N	T	A	K	A	P	S	.	.	.	.	.	.	.	.	.	Y	T	L	V	G	L	F	T	G	Y	K	Y	N	Y	H	N	L	T	V	D	L	F	G	R	V	D	N	L	F	D	K	E	Y	V	G	S	V	I	V	N	E	S	N	G	R	Y	Y	E	P	S	P	G	R	N	Y	G	V	G	M
Query Conservation														.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.																.	.	.																											.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.																											.	.	.	.	.	.	.	.	.
Template Sequence		A	D	S	K	G	N	Y	A	S	T	G	V	S	R	S	E	H	D	T	G	V	S	P	V	F	A	G	G	V	E	W	A	V	T	R	D	.	.	.	I	A	T	R	L	E	Y	Q	W	V	N	N	I	G	D	A	G	T	V	G	T	R	P	D	N	G	.	.	.	.	.	.	.	.	.	M	L	S	L	G	V
Template Known Secondary structure							S				S	S	S																						S	S	S	.	.	.								S	S		S	S					S					S	S		S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																						.	.	.																											.	.	.	.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.										.	.	.	.	.	.
		694	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	A	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Y	R	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions