Job Description P76115 Confidence 5.08% Date Thu Jan 5 12:19:07 GMT 2012 Rank 51 Aligned Residues 66 % Identity 17% Template c2gefA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:protease vp4; PDBTitle: crystal structure of a novel viral protease with a2 serine/lysine catalytic dyad mechanism Resolution 2.20 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.							.	.	.	120	.	.	.	.	.	.	.	.	.	130								.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.														.	.	.	.	.	.															.	.	.	.	.	.	.
Query SS confidence																							.	.														.	.	.	.	.	.															.	.	.	.	.	.	.
Query Sequence		A	Q	D	L	Q	L	S	I	R	G	F	G	S	R	S	T	Y	G	I	R	G	.	.	I	R	L	Y	V	D	G	I	P	A	T	M	P	.	.	.	.	.	.	D	G	Q	G	Q	T	S	N	I	D	L	S	S	V	.	.	.	.	.	.	.	Q	N	V	E	V	L	R	G	P	F	S	A	L	Y	G	N	A
Query Conservation																							.	.														.	.	.	.	.	.															.	.	.	.	.	.	.
Alig confidence																							.	.														.	.	.	.	.	.															.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	S	E	L	Y	I	A	V	R	G	D	H	R	D	L	X	S	P	D	V	R	D	S	Y	A	L	T	G	D	D	H	K	V	W	G	A	T	H	K	F	N	V	K	T	R	T	D	L	T	I	L	P	V	A	D	V	F	W	R	A	D	G	S	A	D	V	D	V	V	W	N	D	X	P	A	V	A	G	Q	S
Template Known Secondary structure											S			G	G	G	S						T						T	T	S					T						S				S	S														T	T	S																S	S	T
Template Predicted Secondary structure
Template SS confidence
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.
		148
Predicted Secondary structure
Query SS confidence
Query Sequence		S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		693

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions