Job Description P0A6W3 Confidence 5.77% Date Thu Jan 5 11:04:03 GMT 2012 Rank 16 Aligned Residues 198 % Identity 15% Template c3aqpB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus Resolution 3.30 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		W	K	Y	F	W	M	S	V	I	A	L	G	V	A	F	A	L	Y	L	A	G	K	D	T	P	A	T	Q	L	V	V	P	F	F	K	D	V	M	P	Q	L	G	L	F	Y	I	L	L	A	Y	F	V	I	V	G	T	G	N	A	V	N	L	T	D	G	L	D	G	L	A	I	M	P	T	V	F	V	A	G	.
Query Conservation																																																																																	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.																																																.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	Q	A	G	I	R	S	A	L	I	G	T	L	A	I	F	L	L	I	F	A	.	.	.	.	.	.	.	.	.	.	.	Y	Y	G	P	H	L	G	L	V	A	S	L	G	L	L	Y	T	S	A	L	I	L	G	L	L	S	G	L	G	A	T	L	T	L	P	G	I	A	G	L	V	L	T	L	G	A	A	V
Template Known Secondary structure																							.	.	.	.	.	.	.	.	.	.	.			T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.												.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
					211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	G	F	A	L	V	A	W	A	T	G	N	M	N	F	A	S	Y	L	H	I	P	Y	L	R	H	A	G	E	L	V	I	V	C	T	A	I	V	G	A	G	L	G	F	L	W	F	N	T	Y	P	A	Q	V	F	M	G	D	V	G	S	L	A	L	G	G	A	L	G	I	I	A	V	L	L	R	Q	E
Query Conservation		.	.	.
Alig confidence		.	.	.																																																																										.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		D	G	N	V	L	S	F	E	R	I	K	E	E	L	R	A	G	K	K	L	R	Q	A	I	P	E	G	F	R	H	S	T	L	T	I	M	D	V	N	I	A	H	L	L	A	A	A	A	L	Y	Q	Y	A	T	G	P	V	R	G	F	A	V	I	L	A	I	G	V	V	A	S	V	F	S	N	L	.	.	.	.
Template Known Secondary structure																	T	T																																			T			T																						.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	L	V	I	M	G	G	V	F	V	V	E	T	L	S	V	I	L	Q	V	G	S	F	K	L	R	G	Q	R	I	F	R	M	A	P	I	H	H	H	Y	E	L	K	G	W	P	E	P	R	V	I	V	R	F	W	I	I	S	L	M	L	V	L	I	G	L	A	T	L	K	V	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	S	R	H	L	L	E	R	L	A	D	R	G	E	I	R	P	P	M	W	L	V	D	P	R	F	N	F	M	G	P	A	R	Y	V	T	A	A	T	L	L	L	A	A	L	A	A	G	V	V	F	A	K	G	F	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T														S	T	T	T	T																							T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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