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Job Description | P0A6W3 | Confidence | 2.98% | Date | Thu Jan 5 11:04:03 GMT 2012 |
Rank | 64 | Aligned Residues | 97 |
% Identity | 14% | Template | c2wwbA_ |
PDB info |
PDB header:ribosome | Chain: A: PDB Molecule:protein transport protein sec61 subunit alpha isoform 1; |
PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome
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Resolution | 6.48 Å |
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14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | |
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Predicted Secondary structure |   |
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Query Sequence |   |
S | G | F | N | V | F | S | Y | L | T | F | R | A | I | V | S | L | L | T | A | L | F | I | S | L | W | M | . |
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Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
D | P | V | H | A | V | V | Y | I | V | F | M | L | G | S | C | A | F | F | S | K | T | W | I | E | V | S | G | S | S | A | K | D | V | A | K | Q | L | K | E | Q | Q | M | V | M | R | G | H | R | E | T | S | M | V | H | E | L | N | R | Y | I | P | T | A | A | A | F | G | G | L | C | I | G | A | L | S | V | L | A | D |
Template Known Secondary structure |   |
S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | S | S |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
357 | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . |
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88 | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
L | L | W | A | Y | P | S | N | P | Y | V | W | C | V | L | V | V | L | V | G | Y | G | V | I | G | F | V | D | D | Y | R | K |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
F | L | G | A | I | G | . |
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S | G | T | G | I | L | L | A | V | T | I | I | Y | Q | Y | F | E |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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437 | . | . | 440 | . | . | |
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. | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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