Job Description P0A6W3 Confidence 10.57% Date Thu Jan 5 11:04:03 GMT 2012 Rank 6 Aligned Residues 109 % Identity 13% Template c2akiY_ PDB info PDB header:protein transport Chain: Y: PDB Molecule:preprotein translocase secy subunit; PDBTitle: normal mode-based flexible fitted coordinates of a2 translocating secyeg protein-conducting channel into the3 cryo-em map of a secyeg-nascent chain-70s ribosome complex4 from e. coli Resolution 14.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.
Predicted Secondary structure																																									.	.																													.	.	.
Query SS confidence																																									.	.																													.	.	.
Query Sequence		H	L	V	K	Y	Y	S	G	F	N	V	F	S	Y	L	T	F	R	A	I	V	S	L	L	T	A	L	F	I	S	L	W	M	G	P	R	M	I	A	.	.	H	L	Q	K	L	S	F	G	Q	V	V	R	N	D	G	P	E	S	H	F	S	K	R	G	T	P	T	M	.	.	.	G	G	I	M	I	L	T	A
Query Conservation																																									.	.																													.	.	.
Alig confidence																																									.	.																													.	.	.
Template Conservation
Template Sequence		T	I	S	L	Y	L	Q	P	G	Q	P	L	Y	V	L	L	Y	A	S	A	I	I	F	F	C	F	F	Y	T	A	L	V	F	N	P	R	E	T	A	D	N	L	K	K	S	G	A	F	V	P	G	I	R	P	G	E	Q	T	A	K	Y	I	D	K	V	M	T	R	L	T	L	V	G	A	L	Y	I	T	F	I
Template Known Secondary structure			S	S	S	S		S																					G	G	G	S	S	S		T	T					T	T	T			S	S	S		T	T	S			S			S	S	S	S	S	S	G	G	G	G	G		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	I	S	V	L	L	W	A	Y	P	S	N	P	Y	V	W	C	V	L	V	V	L	V	G	Y	G	V	I	G	F	V	D	D	Y	R	K
Query Conservation
Alig confidence																		.	.	.
Template Conservation																		.	.	.
Template Sequence		C	L	I	P	E	F	M	R	D	A	M	K	V	P	F	Y	.	.	.	F	G	G	T	S	L	L	I	V	V	V	V	I	M	D	F	M	A
Template Known Secondary structure																S	S	.	.	.	S		S	S	S													T
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400				.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions