 |
Job Description | P0ACS5 | Confidence | 71.42% | Date | Thu Jan 5 11:18:54 GMT 2012 |
Rank | 115 | Aligned Residues | 28 |
% Identity | 11% | Template | c3e7lD_ |
PDB info |
PDB header:transcription regulator | Chain: D: PDB Molecule:transcriptional regulator (ntrc family); |
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
|
Resolution | 2.25 Å |
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | R | I | G | E | L | A | K | M | A | E | V | T | P | D | T | I | R | Y | Y | E | K | Q | Q | M | M | E | H |
Query Conservation |   |
  |   |
|   |
|
|
|   |   |   |
|
|
|   |   |
|
|
|
|
|
|   |   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |
|
|   |   |
|
|
|   |
|   |
|
|   |   |
|
|
|
|   |
|
|   |   |
Template Sequence |   |
Y | D | L | K | R | T | A | E | E | I | G | I | D | L | S | N | L | Y | R | K | I | K | S | L | N | I | R | V |
Template Known Secondary structure |   |
T |
|  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
49 | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|