Job Description P0ACS5 Confidence 99.89% Date Thu Jan 5 11:18:54 GMT 2012 Rank 10 Aligned Residues 98 % Identity 28% Template c2vz4A_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator tipa; PDBTitle: the n-terminal domain of merr-like protein tipal bound to2 promoter dna Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	I	G	E	L	A	K	M	A	E	V	T	P	D	T	I	R	Y	Y	E	K	Q	Q	M	M	E	H	E	V	R	T	E	G	G	F	R	L	Y	T	E	S	D	L	Q	R	L	K	F	I	R	H	A	R	Q	L	G	F	S	L	E	S	I	R	E	L	L	S	I	R	I	D	P	E	H	H	T	C	Q	E
Query Conservation
Alig confidence																																																																						.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.
Template Sequence		Y	S	V	G	Q	V	A	G	F	A	G	V	T	V	R	T	L	H	H	Y	D	D	I	G	L	L	V	P	S	E	R	S	H	A	G	H	R	R	Y	S	D	A	D	L	D	R	L	Q	Q	I	L	F	Y	R	E	L	G	F	P	L	D	E	V	A	A	L	L	D	.	.	.	.	.	D	R	A	H	L	R	R
Template Known Secondary structure		B										T													T	S	S			S				S	S					B																	T	T											T	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70						.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	G	I	V	Q	E	R	L	Q	E	V	E	A	R	I	A	E	L	Q	S	M	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	H	E	L	L	S	A	R	I	G	K	L	Q	K	M	A	A	A	V	E	Q	A	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions