 |
| Job Description | P0ACS5 | | Confidence | 47.97% | Date | Thu Jan 5 11:18:54 GMT 2012 |
| Rank | 361 | Aligned Residues | 64 |
| % Identity | 17% | Template | c2pjpA_ |
| PDB info |
PDB header:translation/rna | Chain: A: PDB Molecule:selenocysteine-specific elongation factor; |
PDBTitle: structure of the mrna-binding domain of elongation factor2 selb from e.coli in complex with secis rna
|
| Resolution | 2.30 Å |
|
| | |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | |
|
|
|
. | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | |
|
|
. | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |
| Predicted Secondary structure | |
|  | | | | | | | |
|
|
| | | | . | . | . | . | | | | | | | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | | | | | | | | | | | | | | . | . | . | |
|
|
|
| | | | | | | | | | |
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
R | I | G | E | L | A | K | M | A | E | V | T | P | D | T | . |
. |
. |
. |
I | R | Y | Y | E | K | Q | Q | M | M | E | H | E | V | R | T | E | G | G | F | R | L | Y | T | E | S | D | L | Q | R | L | K | F | I | R | H | A | R | . |
. |
. |
Q | L | G | F | S | L | E | S | I | R | E | L | L | S | I |
| Query Conservation | |
|
| |
|
|
| | | |
|
|
| | |
| . | . | . | . |
|
|
|
|
| | |
|
|
| |
| | |
| | | | |
|
| |
| | | | |
| | |
| | |
| | |
|
| . | . | . | | |
| | |
| | |
| | | |
| | |
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
| | |
|
| | | |
| | | | | | | | | | |
| | |
| | | |
| |
|
|
|
| | |
| . | . | . | . | |
| | | | | |
| | | | | | |
| | | | | | | | | |
|
|
|
|
| |
|
| | |
| |
| Template Sequence | |
W | V | R | D | L | A | K | E | T | G | T | D | E | Q | A | M | R | L | T | L | R | Q | A | A | Q | Q | G | I | I | T | A | I | V | K | D | . |
. |
. |
. |
R | Y | Y | R | N | D | R | I | V | E | F | A | N | M | I | R | D | L | D | Q | E | C | G | S | T | C | A | A | D | F | R | D | R | L | G | V |
| Template Known Secondary structure | |
 | | | | | | | | T | T |
|
| | | | | | | | | | | | | | T | T | S |  | | | | | T | T | . | . | . | . | | | | | | | | | | | | | | | | | | | | | | | S | S | | | | | | | | | | | T | S |
| Template Predicted Secondary structure | |
| | | | | | | |
|
|
|
| | | | | | | | | | | | | |
|
|
| | | | |
|
|
| . | . | . | . | | | |
| | | | | | | | | | | | | | | | |
|
|
|
|
|
| | | | | | | | |
|
|
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
508 | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | |
|
|
|
. | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
