Job Description P0ACS5 Confidence 41.95% Date Thu Jan 5 11:18:54 GMT 2012 Rank 386 Aligned Residues 87 % Identity 11% Template c2k27A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:paired box protein pax-8; PDBTitle: solution structure of human pax8 paired box domain Resolution UNK

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.					.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.
Predicted Secondary structure																						.	.	.	.																																																					.	.	.
Query SS confidence																						.	.	.	.																																																					.	.	.
Query Sequence		Y	R	I	G	E	L	A	K	M	A	E	V	T	P	D	T	I	R	Y	Y	.	.	.	.	E	K	Q	Q	M	M	E	H	E	V	R	T	E	G	G	F	R	L	Y	T	E	S	D	L	Q	R	L	K	F	I	R	H	A	R	Q	L	G	F	S	L	E	S	I	R	E	L	L	S	I	R	I	D	.	.	.	P
Query Conservation																						.	.	.	.																																																					.	.	.
Alig confidence																						.	.	.	.																																	.																				.	.	.
Template Conservation																																																										.
Template Sequence		V	R	P	C	D	I	S	R	Q	L	R	V	S	H	G	C	V	S	K	I	L	G	R	Y	Y	E	T	G	S	I	R	P	G	V	I	G	G	S	K	P	K	V	A	T	P	K	V	V	E	K	I	G	D	Y	K	R	.	Q	N	P	T	M	F	A	W	E	I	R	D	R	L	L	A	E	G	V	C	D	N	D
Template Known Secondary structure												T			S										S	S	T	T	S																	T	T											.			S	S	S													T		S		T	T
Template Predicted Secondary structure																																																										.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	H	T	C	Q	E	S	K	G	I	V	Q	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	P	S	V	S	S	I	N	R	I	I	R	T	K
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions