Return to main results Retrieve Phyre Job Id

Job DescriptionP77561
Confidence100.00%DateThu Jan 5 12:30:35 GMT 2012
Rank24Aligned Residues470
% Identity24%Templated1y5ia2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   52.......60.........70.........80.........90 .........100.........110.....
Predicted Secondary structure 






























..














..............
Query SS confidence 






































. .
























. . . . . . . . . . . . . .
Query Sequence  CAWPDPKHSASFDICENGAKAIAWEVTDKQVNASFFAEN. . TVQSLLTWGDHELEAAGRLTQPLKY. . . . . . . . . . . . . .
Query Conservation 
             
                        ..            
    

  

 
..............
Alig confidence 






































..
























..............
Template Conservation     

   
   
 



 
 
     
 
    
 
    
 
 

 
    

 







 
      
       
Template Sequence  HGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPMMRKRLMKMWREAKALH
Template Known Secondary structure 

SSSS



TT


S



TTS


TT


TGGGGGTSTTB

S
TT
Template Predicted Secondary structure 























































Template SS confidence 















































































   4950.........60.........70.........80.........90.........100.........110.........120........
 
   116...120.........130.........140. ........150.........160.... .....
Predicted Secondary structure  ......................





...







.
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . .

























. . .






















.




Query Sequence  . . . . . . . . . . . . . . . . . . . . . . DAVSDCYKPLSWQQAFDEIGARLQSY. . . SDPNQVEFYTSGRTSNEAAFLYQ. LFARE
Query Conservation  ...................... 

   
  






  

 


 
...          

    
   
  . 
   
Alig confidence  ......................

























...






















.




Template Conservation       
               
 

 
 
 








 

 

  
   





      
           

   
Template Sequence  SDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSL
Template Known Secondary structure  SST
TTTTSS


T
GGG


GGGS
Template Predicted Secondary structure 

































Template SS confidence 















































































   129130.........140.........150.........160.........170.........180.........190.........200........
 
   170.........180.........190.........200.........210.........220.........230.........240.........
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  YGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQER
Query Conservation   

 
       
      
     
         
   

 

  
 

    
     
  
  










 
 
Alig confidence 
















..



























































.
Template Conservation 


              ..
     
         
  


 

 







       
 


 












.
Template Sequence  IGGTCLSFYDWYCDLPP. . ASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYA.
Template Known Secondary structure  T


TTTTT
S
T..S
S




TT
SS

SGGGGGGT

SS

.
Template Predicted Secondary structure 










..




















.
Template SS confidence 















































































   209210.........220..... ....230.........240.........250.........260.........270.........280.....
 
   250.........260.........270.........280.........290.........300.........310.. .......320.
Predicted Secondary structure 







































......


..
Query SS confidence 






























































. . . . . .








. .
Query Sequence  GLERFTAPQNPFEMLTNSETQLASAYYNVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDD. . . . . . EFIQTHTVG. .
Query Conservation         
          

  

  
 





 

  

   

             
 
 ...... 

   
 
..
Alig confidence  .................































..........



......








..
Template Conservation  ................. 

  

 








 





  


 
 ..........



      


  


 

Template Sequence  . . . . . . . . . . . . . . . . . EIAKLCDLWLAPKQGTDAAMALAMGHVMLREF. . . . . . . . . . HLDNPSQYFTDYVRRYTDMPM
Template Known Secondary structure  .................TSS


TT
..........TTTS

BSTTB
Template Predicted Secondary structure  .................








..........











Template SS confidence 















































































   286...290.........300.........310....... ..320.........330........
 
  
Predicted Secondary structure  ................................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation 

  
        
  

 

               

 
  
    
 
  
        
                  
Template Sequence  LVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQLS
Template Known Secondary structure 
SSS
BGGGBTTGGG

SSGGG
B
BTTS

BTTSGGGTSSS
S

S
SSBBTTT

B

B


Template Predicted Secondary structure 













































































Template SS confidence 















































































   339340.........350.........360.........370.........380.........390.........400.........410........
 
   322......
Predicted Secondary structure  .........................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .






. . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FDELRRD. . . . . . . . . . . . . . . . . .
Query Conservation  .......................................................

     ..................
Alig confidence  .......................................................






..................
Template Conservation                                           
   

  
 
 







                   
Template Sequence  LLGSQDEIAEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDD
Template Known Secondary structure 
TTS
S

TT


TTS





SBTTS
TTB

SS

TTSBSSTTS
Template Predicted Secondary structure 































































Template SS confidence 















































































   419420.........430.........440.........450.........460.........470.........480.........490........
 
   329330.........340.........350...... ...360.........370.........380.........390.........400...
Predicted Secondary structure 





.....






















Query SS confidence 



























. . . . .














































Query Sequence  VLNSEWKDIERISGLSQTQIAELADAYA. . . . . AAERTIICYGMGITQHEHGTQNVQQLVNLLLMKGNIGKPGAGICPLR
Query Conservation 
   
 
  
 



  
 
  

   
..... 
       
 
      
    


  
  
 








  
  
Alig confidence 



























.....














































Template Conservation     














 
  



 
     
 
 
 
  
 
     

    


  
 






 



     
Template Sequence  VKAYTPAWAEQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYV
Template Known Secondary structure 

TT



TS

TSTTTT
TTSTT

S
Template Predicted Secondary structure 































Template SS confidence 















































































   499500.........510.........520.........530.........540.........550.........560.........570........
 
   404.....410 .........420.........430......
Predicted Secondary structure 






...............................................














Query SS confidence 






. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

























Query Sequence  GHSNVQG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DRTVGITEKPSAEFLARLGERYGFTP
Query Conservation 
  
  
...............................................    
    
            
   
Alig confidence 






...............................................

























Template Conservation 
        
      
 
         
                       
                     

 
  
Template Sequence  GQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSA
Template Known Secondary structure  S



SSTTTT
S


TTGGGG



SGGGS
TTS
GGGS
S
TTSS

S
Template Predicted Secondary structure 











































































Template SS confidence 















































































   579580.........590.........600.........610.........620.........630.........640.........650........
 
   437..440.........450 .........460.........470
Predicted Secondary structure 






............................








..................
Query SS confidence 













. . . . . . . . . . . . . . . . . . . . . . . . . . . .



















. . . . . . . . . . . . . . . . . .
Query Sequence  PHAPGHAAIASMQA. . . . . . . . . . . . . . . . . . . . . . . . . . . . ICTGQARALICMGGNFALAM. . . . . . . . . . . . . . . . . .
Query Conservation 
   
         ............................   
 

 
   
 

  
 ..................
Alig confidence 













............................



















..................
Template Conservation 
                                               
  

   
 
 
   
  
 

       
 
Template Sequence  PQLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGI
Template Known Secondary structure  S
BSS
TTSTTS
TSS
BGGG
TTSSSSS

S

TTTTT
SSTT
S



Template Predicted Secondary structure 






































































Template SS confidence 















































































   659660.........670.........680.........690.........700.........710.........720.........730........
 
   471........480.........490.........500.........510.........520.........530......
Predicted Secondary structure  ..............





























Query SS confidence  . . . . . . . . . . . . . .

































































Query Sequence  . . . . . . . . . . . . . . PDREASAVPLTQLDLAVHVATKLNRSHLLTARHSYILPVLGRSEIDMQKNGAQAVTVEDSMSMIHA
Query Conservation  ..............

     


 



 
  
    

   
  





     
                   
  
Alig confidence  ..............





























...













.......











Template Conservation                        
  






 
  

 

 

...







  

 
.......
  
     
  
Template Sequence  QGKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYS. . . DIILPTATWYEKDD. . . . . . . MNTSDMHPFIHP
Template Known Secondary structure 
S

TTTTT



SSS


SS





SSB

T
...SB

TTSS
.......

SSSS
Template Predicted Secondary structure 























...




.......



Template SS confidence 















































































   739740.........750.........760.........770.........780.. .......790...... ...800........
 
   537..540.........550.........560..
Predicted Secondary structure 












Query SS confidence 

























Query Sequence  SRGVLKPAGVMLKSECAVVAGIAQAA
Query Conservation        
  

 
 
  
   

 

Alig confidence 







.
















Template Conservation     

 
 .





 

   




Template Sequence  LSAAVDPA. WEAKSDWEIYKAIAKKF
Template Known Secondary structure 

SS

S.TT
B
Template Predicted Secondary structure 







.




Template SS confidence 

























   809810...... ...820.........830...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions