Job Description P77561 Confidence 96.45% Date Thu Jan 5 12:30:35 GMT 2012 Rank 48 Aligned Residues 187 % Identity 13% Template c3knzA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:putative sugar binding protein; PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	F	D	E	I	G	A	R	L	Q	S	Y	S	D	P	N	Q	V	E	F	Y	T	S	G	R	T	S	N	E	A	A	F	L	Y	Q	L	F	A	R	E	Y	G	S	N	N	F	P	D	C	S	N	M	C	H	E	P	T	S	V	G	L	A	A	S	I	G	V	G	K	G	T	V	L	L	E	D	F	E	K
Query Conservation
Alig confidence														.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	D	L	W	R	A	A	Q	A	L	T	E	.	R	G	V	T	R	I	I	L	T	G	S	G	T	S	Y	H	G	A	L	T	A	R	T	F	X	Q	R	W	C	A	L	P	V	D	V	C	W	P	F	X	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	E	T	L	A	R	S
Template Known Secondary structure														.	T	T																												T	S							G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S
Template Predicted Secondary structure														.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.																			70	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		C	D	L	V	I	C	I	G	H	N	P	G	T	N	H	P	R	M	L	T	S	L	R	A	L	V	K	R	G	A	K	M	I	A	I	N	P	L	Q	E	R	G	L	E	R	F	T	A	P	Q	N	P	F	E	M	L	T	N	S	E	T	Q	L	A	S	A	Y	Y	N	V	R	I	G	G	D	M	A	L	.	.
Query Conservation																																																																																.	.
Alig confidence																	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation																	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	K	A	L	V	V	G	I	S	Q	G	G	G	S	L	.	S	T	L	A	A	X	E	R	A	R	N	V	G	H	I	T	A	S	X	A	G	V	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	I	D	R	A	A	D	Y	I	L	T	V	P	C	G	E	T	K	G	Y	H	C
Template Known Secondary structure			S								S	S	S				.												T	T								S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	G	G		S											T
Template Predicted Secondary structure																	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.																		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
							287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	L	K	G	M	M	R	L	L	I	E	R	D	D	A	A	S	A	A	G	R	P	S	L	L	D	D	E	F	I	Q	T	H	T	V	G	F	D	E	L	R	R	D	V	L	N	S	E	W	K	D	I	E	R	I	S	G	L	S	Q	T	Q	I	A	E	L	A	D	A	Y	A	A	A	E	R	T
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.													.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template Sequence		T	V	L	N	L	X	L	L	A	L	A	V	A	G	Q	Q	Q	.	.	.	.	.	.	.	.	.	.	R	L	D	G	E	Q	R	R	S	L	L	L	R	X	E	K	T	F	N	H	L	P	A	L	V	T	A	S	.	.	.	.	.	.	.	.	Q	A	W	A	Q	T	N	A	L	A	L	R	D	S	A	D	I
Template Known Secondary structure																	T	T	.	.	.	.	.	.	.	.	.	.		S																											.	.	.	.	.	.	.	.							T						T		S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.											.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190									.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	C	Y	G	M	G	I	T	Q
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		R	L	T	.	G	P	A	T	L	F
Template Known Secondary structure					.			G	G	G
Template Predicted Secondary structure					.
Template SS confidence
		208	.	210		.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions