Job Description P77561 Confidence 100.00% Date Thu Jan 5 12:30:35 GMT 2012 Rank 3 Aligned Residues 666 % Identity 21% Template c2v45A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand Resolution 2.40 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	P	E	G	F	D	C	P	G	C	A	W	P	D	P	K	H	S	A	S	F	D	I	C	E	N	G	A	K	A	I	A	W	E	V	T	D	K	Q	V	N	A	S	F	F	A	E	N	T	V	Q	S	L	L	T	W	G	D	H	E	L	E	A	A	G	R	L	T	Q	P	L	K	Y	D	A	V	S	D	C
Query Conservation
Alig confidence															.															.													.	.	.	.	.
Template Conservation															.															.													.	.	.	.	.
Template Sequence		N	R	P	E	K	W	V	K	G	V	C	R	Y	.	C	G	T	G	C	G	V	L	V	G	V	K	D	G	.	K	A	V	A	I	Q	G	N	P	N	N	H	.	.	.	.	.	N	A	G	L	L	C	L	K	G	S	L	L	I	P	V	L	N	S	K	E	R	V	T	Q	P	L	V	R	R	H	K	G	G	K
Template Known Secondary structure		S	S		S								S	S	.		T	T										T	T	.									T	T	S	T	.	.	.	.	.	T	T	T								T						T		S		S			S					S	S	T	T
Template Predicted Secondary structure															.															.													.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.																										.
Query SS confidence																								.	.	.																										.
Query Sequence		Y	K	P	L	S	W	Q	Q	A	F	D	E	I	G	A	R	L	Q	S	Y	S	D	.	.	.	P	N	Q	V	E	F	Y	T	S	G	R	T	S	N	E	A	A	F	L	Y	Q	L	F	A	R	.	E	Y	G	S	N	N	F	P	D	C	S	N	M	C	H	E	P	T	S	V	G	L	A	A	S	I	G	V	G
Query Conservation																								.	.	.																										.
Alig confidence																								.	.	.																										.
Template Conservation
Template Sequence		L	E	P	V	S	W	D	E	A	L	D	L	M	A	S	R	F	R	S	S	I	D	M	Y	G	P	N	S	V	A	W	Y	G	S	G	Q	C	L	T	E	E	S	Y	V	A	N	K	I	F	K	G	G	F	G	T	N	N	V	D	G	N	P	R	L	C	M	A	S	A	V	G	G	Y	V	T	S	F	G	K	D
Template Known Secondary structure																											G	G	G							T	T	S														T	T	T								G	G	G	G	T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		K	G	T	V	L	L	E	D	F	E	K	C	D	L	V	I	C	I	G	H	N	P	G	T	N	H	P	R	M	L	T	S	L	R	A	L	V	K	.	.	R	G	A	K	M	I	A	I	N	P	L	Q	E	R	G	L	E	R	F	T	A	P	Q	N	P	F	E	M	L	T	N	S	E	T	Q	L	A	S	A	Y
Query Conservation																																								.	.
Alig confidence																																								.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	P	M	G	T	Y	A	D	I	D	Q	A	T	C	F	F	I	I	G	S	N	T	S	E	A	H	P	V	L	F	R	R	I	A	R	R	K	Q	V	E	P	G	V	K	I	I	V	A	D	P	R	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	S	R	I	A	D	M	H
Template Known Secondary structure		S		S	S		G	G	G	G	G	T		S						S							S															T	T								S	B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G	G		S
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.																			.	210	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.										320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.
Query Sequence		Y	N	V	R	I	G	G	D	M	A	L	L	K	G	M	M	R	L	L	I	E	R	D	D	A	A	S	A	A	G	R	P	S	L	L	D	D	E	F	I	Q	T	H	T	.	.	.	.	.	.	.	.	.	V	G	F	D	E	L	R	R	D	V	L	N	S	E	W	K	D	I	E	R	I	S	G	L	S	Q	T
Query Conservation																																														.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	F	R	P	G	T	D	L	A	F	M	H	S	M	A	W	V	I	I	N	E	E	.	.	.	.	.	.	.	.	.	.	L	D	N	P	R	F	W	Q	R	Y	V	N	F	M	D	A	E	G	K	P	S	D	F	E	G	Y	K	A	F	L	E	N	Y	R	P	E	K	V	A	E	I	C	R	V	P	V	E
Template Known Secondary structure						T	T																T	T	.	.	.	.	.	.	.	.	.	.		S														T	T	S		B											G	G	G										T	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240											.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410										.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	A	E	L	A	D	A	Y	A	A	A	E	R	T	I	I	C	Y	G	M	G	I	T	Q	H	E	H	G	T	Q	N	V	Q	Q	L	V	N	L	L	L	M	K	G	N	I	G	K	P	G	A	G	I	C	P	L	R	G	H	S	N	V	Q	G	.	.	.	.	.	.	.	.	.	D	R	T	V	G	I	T
Query Conservation																																																																		.	.	.	.	.	.	.	.	.
Alig confidence																																																																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	I	Y	G	A	A	R	A	F	A	E	S	A	A	T	M	S	L	W	C	M	G	I	N	Q	R	V	Q	G	V	F	A	N	N	L	I	H	N	L	H	L	I	T	G	Q	I	C	R	P	G	A	T	S	F	S	L	T	G	Q	P	N	A	C	G	G	V	R	D	G	G	A	L	S	H	L	L	P	A	G	R
Template Known Secondary structure													S	S	S											S	S	T	T																T			S	B	T	T	B								S	T	T					T	T	T	T	T		S	T	T			T	T	T
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.				.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.		.	.	.	.	.	490	.	.	.
Predicted Secondary structure																				.	.	.																																																		.
Query SS confidence																				.	.	.																																																		.
Query Sequence		E	K	P	S	A	E	F	L	A	R	L	G	E	R	Y	G	F	T	.	.	.	P	P	H	A	P	G	H	A	A	I	A	S	M	Q	A	I	C	T	G	Q	A	R	A	L	I	C	M	G	G	N	F	A	L	A	M	P	D	R	E	A	S	A	V	P	L	T	Q	L	D	.	L	A	V	H	V	A	T	K	L
Query Conservation																				.	.	.																																																		.
Alig confidence																				.	.	.																																																		.
Template Conservation
Template Sequence		A	I	P	N	A	K	H	R	A	E	M	E	K	L	W	G	L	P	E	G	R	I	A	P	E	P	G	Y	H	T	V	A	L	F	E	A	L	G	R	G	D	V	K	C	M	I	I	C	E	T	N	P	A	H	T	L	P	N	L	N	K	V	H	K	A	M	S	H	P	E	S	F	I	V	C	I	E	A	F	P
Template Known Secondary structure			T	T												T	T			T	T		S		S	S															T	S								S							S	S	S								T	T		T	T								S		T
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
			494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.		.	.	.	.	570	.
Predicted Secondary structure		.																																																																									.
Query SS confidence		.																																																																									.
Query Sequence		.	N	R	S	H	L	L	T	A	R	H	S	Y	I	L	P	V	L	G	R	S	E	I	D	M	Q	K	N	G	A	Q	A	V	T	V	E	D	S	M	S	M	I	H	A	S	R	G	V	L	K	P	A	G	V	M	L	K	S	E	C	A	V	V	A	G	I	A	Q	A	A	L	P	Q	.	S	V	V	A	W	E
Query Conservation		.																																																																									.
Alig confidence		.								.	.	.															.	.	.	.	.	.	.	.																				.																					.
Template Conservation										.	.	.															.	.	.	.	.	.	.	.																				.
Template Sequence		D	A	V	T	L	E	Y	A	.	.	.	D	L	V	L	P	P	A	F	W	C	E	R	D	G	.	.	.	.	.	.	.	.	V	Y	G	C	G	E	R	R	Y	S	L	T	E	K	A	V	D	P	P	.	G	Q	C	R	P	T	V	N	T	L	V	E	F	A	R	R	A	G	V	D	P	Q	L	V	N	F	R
Template Known Secondary structure		T		G	G	G	G	S		.	.	.	S					B			G	G	G	S			.	.	.	.	.	.	.	.					T	T	S									S			S	.	T	T		B													T	T			T	T	T	T			S
Template Predicted Secondary structure										.	.	.															.	.	.	.	.	.	.	.																				.
Template SS confidence
		448	.	450	.	.	.	.	.				.	.	.	.	460	.	.	.	.	.	.	.	.	.									470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.		.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
		572	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.		.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.																									.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure																										.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	V	E	D	Y	D	R	I	R	N	D	I	E	A	V	L	P	E	F	A	D	Y	N	.	Q	R	I	R	H	P	G	G	F	H	L	I	N	A	A	A	E	R	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	M	T	P	S	G	K	A	N	F	I	T
Query Conservation																										.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	A	E	D	V	W	N	E	W	R	M	V	S	K	G	T	T	Y	D	F	W	G	M	T	R	E	R	L	R	K	E	S	G	L	I	W	P	C	P	S	E	D	H	P	G	T	S	L	R	Y	V	R	G	Q	D	P	C	V	P	A	D	H	P	D	R	F	F	F	Y	G	K	P	D	G	R	A	V	I	W	M
Template Known Secondary structure		S													T	T	S	T	T			T	T									S	S				S				S	T	T					S	S	T	T	B	T	T	T	S	T	T	S		T	T		S	S	S	B			T	T	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	G	L	L	E	D	P	S	S	A	F	N	S	K	L	V	M	A	T	V	R	S	H	D	Q	Y	N	T	T	I	Y	G	M	D	D	R	Y	R	G	V	F	G	Q	R	D	V	V	F	M	S	A	K	Q	A	K	I	C	R	V	K	N	G	E	R	V	N	L	I	A	L	T	P	D	G	K	R	S	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	P	A	K	G	A	A	E	E	P	D	A	E	Y	P	L	Y	L	T	S	M	R	V	I	D	H	W	H	T	A	T	M	T	G	K	V	P	E	L	Q	K	A	N	P	I	A	F	V	E	I	N	E	E	D	A	A	R	T	G	I	K	H	G	D	S	V	I	V	E	T	R	R	D	A	M	E	L	P	A	R
Template Known Secondary structure								S	S				S	S	S										S	S			T	T		T	T	G	G	G		G	G	G	G	S	S		S	S														T			T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		596	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.
		707	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	D	R	L	K	V	V	I	Y	P	M	A	D	R	S	L	V	T	Y	F	P	E	S	N	H	M	L	T	L	D	N	H	D	P	L	S	G	I	P	G	Y	K	S	I	P	V	E	L	E	P	S
Query Conservation
Alig confidence																					.	.	.								.
Template Conservation																					.	.	.								.
Template Sequence		V	S	D	V	C	R	P	G	L	I	A	V	P	F	F	D	P	K	K	.	.	.	L	V	N	K	L	F	L	.	D	A	T	D	P	V	S	R	E	P	E	Y	K	I	C	A	A	R	V	R	K	A
Template Known Secondary structure				S	S	B		T	T									T	T	S	.	.	.		G	G	G	T	S		.			B		T	T	T			B		T	T
Template Predicted Secondary structure																					.	.	.								.
Template SS confidence
		676	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.				.	.	.	.	.	700	.		.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.