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Job DescriptionP77561
Confidence100.00%DateThu Jan 5 12:30:35 GMT 2012
Rank11Aligned Residues669
% Identity17%Templatec2ivfA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
Resolution1.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   47..50.........60.........70.........80.........90. ........100.........110..... ....120..
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Query Sequence  FDCPGCAWPDPKHSASFDICENGAKAIAWEVTDKQVNASFFAENT. . VQSLLTWGDHELEAAGRLTQPLKY. . DAVSDCY
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Template Sequence  GSHLNICW. PQGSCKFYVYVRNGIVWREEQAAQTPACNVDYVDYNPLGCQKGSAFNNNLYGDERVKYPLKRVGKRGEGKW
Template Known Secondary structure 


S

S.S




TT





SSTTS



S


TTGGGTTSTTB

S

SSTTS

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   80....... ..90.........100.........110.........120.........130.........140.........150........
 
   123......130.........140. ........150.........160.... .....170.........180.........190........
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Query Sequence  KPLSWQQAFDEIGARLQSY. . . SDPNQVEFYTSGRTSNEAAFLYQ. LFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGK
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Template Sequence  KRVSWDEAAGDIADSIIDSFEAQGSDGFILDAPHVHAGSIAWGAGFRMTYLMDGVSPDINVDIGDTY. . MGAFHTFGKMH
Template Known Secondary structure 

GGGG



STT
T
B
T


..S


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   159160.........170.........180.........190.........200.........210.........220..... ....230......
 
   199200.........210.........220.........230.........240.........250.........260.........270........
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Query Sequence  GTVLLEDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYYNV
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Template Sequence  MGYSADNLLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFN. . . . . . . . . . . . . . . . . . PTTPAADLHVPV
Template Known Secondary structure 
B

GGGGGG
SS


TTTT

SS

..................TTGGG
S

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   237..240.........250.........260.........270.........280...... ...290........
 
   279280.........290.........300.........310.........
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Query Sequence  RIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  RVGSDAAFWLGLSQVMIDEK. . . . . . . . . . LFDRQFVCEQTDLPLLVRMDTGKFLSAEDVDGGEAKQFYFFDEKAGSVRK
Template Known Secondary structure 
TT
TT..........
S
BSTTSTTT
SB
BS

TT
TTTT
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   299300.........310........ .320.........330.........340.........350.........360........
 
   320.........330.........340.........350.........360........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VGFDELRRDVLNSEWKDIERISGLSQTQIAELADAYAAAERTIICYGMG
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Template Sequence  ASRGTLKLDFMPALEGTFSARLKNGKTIQVRTVFEGLREHLKDYTPEKASAKCGVPVSLIRELGRKVAKKRTCSY. IGFS
Template Known Secondary structure 
SS



SS



S

TTS
GGGGS


S
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TT
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   369370.........380.........390.........400.........410.........420.........430.........440... ....
 
   369370.........380.........390.........400.........410.........420.........430......
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Query Sequence  ITQHEHGTQNVQQLVNLLLMKGNIGKPGAGICPLRGHSNVQGDRTVGITEKPSAEFLARLGERYGFTP. . . . . . . . . . . .
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Template Sequence  SAKSYHGDLMERSLFLAMALSGNWGKPGTGAFAWAYSDDNMVYLGVMSKPTAQGGMDELHQMAEGFNKRTLEADPTSTDE
Template Known Secondary structure  TTTBTTTT
SSSTT

S
B





SS
GGGTTT
TT

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   448.450.........460.........470.........480.........490.........500.........510.........520.......
 
   437..440.........450.........460...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PHAPGHAAIASMQAICTGQARALICMG
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Template Conservation                                                           
              

      
Template Sequence  MGNIEFMKVVTSAVGLVPPAMWLYYHVGYDQLWNNKAWTDPALKKSFGAYLDEAKEKGWWTNDHIRPAPDKTPQVYMLLS
Template Known Secondary structure  TT
SSTT
GGGS
TTSSS
TTSS
TTTS
S
TTS


S
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   528.530.........540.........550.........560.........570.........580.........590.........600.......
 
   464.....470...... ...480.........490.........500.........510.........520.........530.........540.
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Query Sequence  GNFALAMPDREAS. . AVPLTQLDLAVHVATKLNRSHLLTARHSYILPVLGRSEIDMQKNGAQAVTVEDSMSMIHASRGVL
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Template Sequence  QNPMRRKRSGAKMFPDVLFPKLKMIFALETRMSSSAMYA. . . DIVLPCAWYYEKHEMTTPCSG. . . . . . NPFFTFVDRSV
Template Known Secondary structure 

STTTTGGG
SSB

TTGGG
...SB

TT



SS......S

S
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   608.610.........620.........630.........640...... ...650.........660....... ..670........
 
   542.......550.........560... ......570.........580.........590....
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Query Sequence  KPAGVMLKSECAVVAGIAQAAL. . . . . . . . . . . . . . . . . . . . . . . . . . . PQSVVAWEYLVEDYDRIRNDIEAVLPEFADY
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Template Sequence  APP. GECREEWDAIALILKKVGERAAARGLTEFNDHNGRKRRYDELYKKFTMDGHLLTNEDCLKEMVDINRAVGVFAKDY
Template Known Secondary structure 

S.TT
B
TT


TTS
GGGTTTTT

STTSS
TT
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   679680. ........690.........700.........710.........720.........730.........740.........750.......
 
   595....600.........610 .........620....... ..630......
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Query Sequence  NQRIRHPGGFHLINAA. . . . . . . . . . . . . . . . . . . . . . . . . . . AERRWMTPSGKANFITS. . . . . . . . . . . KGLLEDPSS
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Template Conservation    
                                              
 


   
          
 

        
Template Sequence  TYEKFKKEGQTRFLSMGTGVSRYAHANEVDVTKPIYPMRWHFDDKKVFPTHTRRAQFYLDHDWYLEAGESLPTHKDTPMV
Template Known Secondary structure 



S
TTST
S


TTS


S
S



SSTTSSB





T
SS







T
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   758.760.........770.........780.........790.........800.........810.........820.........830.......
 
   637..640.........650.........660.........670.........680.........690.........700.........710......
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Query Sequence  AFNSKLVMATVRSHDQYNTTIYGMDDRYRGVFGQRDVVFMSAKQAKICRVKNGERVNLIALTPDGKRSSRRMDRLKVVIY
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Template Sequence  GGDHPFKITGGHPRVSIHSTHLT. NSHLSRLHRGQPVVHMNSKDAAELGIKDGDMAKLFNDFADCEIMVRTAPNVQPKQC
Template Known Secondary structure  TSS
S



SSSSTTTTTT.
TTS
SS
TT

TT

SS
TTS
TT
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   838.840.........850.........860 .........870.........880.........890.........900.........910......
 
   717..720.........730 ...... ...740......... 750........
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Query Sequence  PMADRSLVTYFPES. . NHMLTL. . DNHDPLSGIPGYK. . . . . . . . . . . . . . SIPVELEPS
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Template Conservation                  
 

     
    


           
     

  
 
 

Template Sequence  IVYFWDAHQYKGWKPYDILLIGMPKPLHLAGGYEQFRYYFMNGSPAPVTDRGVRVSIKKA
Template Known Secondary structure 




GGGSGGG

GGGG





GGGG

SBTTB

BTTB
S

S


BT
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   917..920.........930.........940.........950.........960.........970......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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