Job Description P77561 Confidence 100.00% Date Thu Jan 5 12:30:35 GMT 2012 Rank 7 Aligned Residues 656 % Identity 23% Template c2iv2X_ PDB info PDB header:oxidoreductase Chain: X: PDB Molecule:formate dehydrogenase h; PDBTitle: reinterpretation of reduced form of formate dehydrogenase h2 from e. coli Resolution 2.27 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																																																															.	.	.	.
Query SS confidence																																																															.	.	.	.
Query Sequence		F	D	C	P	G	C	A	W	P	D	P	K	H	S	A	S	F	D	I	C	E	N	G	A	K	A	I	A	W	E	V	T	D	K	Q	V	N	A	S	F	F	A	E	N	T	V	Q	S	L	L	T	W	G	D	H	E	L	E	A	A	G	.	.	.	.	R	L	T	Q	P	L	K	Y	D	A	V	S	D	C	Y
Query Conservation																																																															.	.	.	.
Alig confidence												.	.	.	.										.													.	.	.	.	.																					.	.	.	.
Template Conservation												.	.	.	.										.													.	.	.	.	.
Template Sequence		T	V	C	P	Y	C	A	S	G	C	.	.	.	.	K	I	N	L	V	V	D	N	G	.	K	I	V	R	A	E	A	A	Q	G	K	T	.	.	.	.	.	N	Q	G	T	L	C	L	K	G	Y	Y	G	W	D	F	I	N	D	T	Q	I	L	T	P	R	L	K	T	P	M	I	R	R	Q	R	G	G	K	L
Template Known Secondary structure					S	S	B	T	T			.	.	.	.								T	T	.											T	T	.	.	.	.	.	T	T	T									T	T	G	G	G	G				S	S	S		B			S						S	T	T	S
Template Predicted Secondary structure												.	.	.	.										.													.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.					.	.	.	.	20	.	.	.	.		.	.	.	.	.	30	.	.	.	.	.	.						.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																.
Query SS confidence																					.	.	.																.
Query Sequence		K	P	L	S	W	Q	Q	A	F	D	E	I	G	A	R	L	Q	S	Y	.	.	.	S	D	P	N	Q	V	E	F	Y	T	S	G	R	T	S	.	N	E	A	A	F	L	Y	Q	L	F	A	R	E	Y	G	S	N	N	F	P	D	C	S	N	M	C	H	E	P	T	S	V	G	L	A	A	S	I	G	V	G	K
Query Conservation																					.	.	.																.
Alig confidence																					.	.	.																.
Template Conservation
Template Sequence		E	P	V	S	W	D	E	A	L	N	Y	V	A	E	R	L	S	A	I	K	E	K	Y	G	P	D	A	I	Q	T	T	G	S	S	R	G	T	G	N	E	T	N	Y	V	M	Q	K	F	A	R	A	V	I	G	T	N	N	V	D	C	C	A	R	V	H	G	P	S	V	A	G	L	H	Q	S	V	G	N	G	A
Template Known Secondary structure																										G	G	G							S	S	T	T															T	T								S	S					S	S	S		S						S			S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	V	L	L	E	D	F	E	K	C	D	L	V	I	C	I	G	H	N	P	G	T	N	H	P	R	M	L	T	S	L	R	A	L	V	K	R	G	A	K	M	I	A	I	N	P	L	Q	E	R	G	L	E	R	F	T	A	P	Q	N	P	F	E	M	L	T	N	S	E	T	Q	L	A	S	A	Y	Y	N	V
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	S	N	A	I	N	E	I	D	N	T	D	L	V	F	V	F	G	Y	N	P	A	D	S	H	P	I	V	A	N	H	V	I	N	A	K	R	N	G	A	K	I	I	V	C	D	P	R	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	A	R	I	A	D	M	H	I	A	L
Template Known Secondary structure			S	S		G	G	G	G	G	G		S						S																				T	T								S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T		S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.																			.	.	.	210	.	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	G	G	D	M	A	L	L	K	G	M	M	R	L	L	I	E	R	D	D	A	A	S	A	A	G	R	P	S	L	L	D	D	E	F	I	Q	T	H	T	V	G	F	D	E	L	R	R	D	V	L	N	S	E	W	K	D	I	E	R	I	S	G	L	S	Q	T	Q	I	A	E	L	A	D	A	Y	A	A	A
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.
Template Sequence		K	N	G	S	N	I	A	L	L	N	A	M	G	H	V	I	I	E	E	N	.	.	.	.	.	.	.	.	.	.	L	Y	D	K	A	F	V	A	S	R	T	E	G	F	E	E	Y	R	K	I	V	E	G	Y	T	P	E	S	V	E	D	I	T	G	V	S	A	S	E	I	R	Q	A	A	R	M	Y	A	Q	A
Template Known Secondary structure			T	T																T	T	.	.	.	.	.	.	.	.	.	.		S																					T			S	G	G	G																					S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.											.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.									420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.
Query Sequence		E	R	T	I	I	C	Y	G	M	G	I	T	Q	H	E	H	G	T	Q	N	V	Q	Q	L	V	N	L	L	L	M	K	G	N	I	G	K	P	G	A	G	I	C	P	L	R	G	H	S	N	V	Q	G	D	R	T	V	G	I	T	E	K	.	.	.	.	.	.	.	.	P	S	A	E	F	L	A	R	L	G	E
Query Conservation																																																															.	.	.	.	.	.	.	.
Alig confidence																																																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	A	A	I	L	W	G	M	G	V	T	Q	F	Y	Q	G	V	E	T	V	R	S	L	T	S	L	A	M	L	T	G	N	L	G	K	P	H	A	G	V	N	P	V	R	G	Q	N	N	V	Q	G	A	C	D	M	G	A	L	P	D	T	Y	P	G	Y	Q	Y	V	K	D	P	A	N	R	E	K	F	A	K
Template Known Secondary structure		S	S							T	T	G	G	G	S	S	S															T	T		S	S	S	T	T		S						S	B	T	T							T	T		B	T	T			G	G	G			T	T
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		431	.	.	.	.		.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		R	Y	G	F	T	.	P	P	H	A	P	G	H	A	A	I	A	S	M	Q	A	I	C	T	G	Q	A	R	A	L	I	C	M	G	G	N	F	A	L	A	M	P	D	R	E	A	S	A	V	P	L	T	Q	L	D	L	A	V	H	V	A	T	K	L	N	R	S	H	L	L	T	A	R	H	S	Y	I	L	P	V
Query Conservation							.
Alig confidence							.																																																																		.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		A	W	G	V	E	S	L	P	A	H	T	G	Y	R	I	S	E	L	P	H	R	A	A	H	G	E	V	R	A	A	Y	I	M	G	E	D	P	L	Q	T	D	A	E	L	S	A	V	R	K	A	F	E	D	L	E	L	V	I	V	Q	D	I	F	M	T	K	T	A	S	A	A	.	.	.	D	V	I	L	P	S
Template Known Secondary structure			T	T		S					S					G	G	G							T	T	S								S							S	S	S											S	S							S	B							T		.	.	.	S					B
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.				440	.	.	.	.	.
		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	R	S	E	I	D	M	Q	K	N	G	A	Q	A	V	T	V	E	D	S	M	S	M	I	H	A	S	R	G	V	L	K	P	A	G	V	M	L	K	S	E	C	A	V	V	A	G	I	A	Q	A	A	L	P	Q	S	V	V	A	W	E	Y	L	V	E	D	Y	D	R	I	R	N	D	I	E	A	V	L	P
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.																				.																											.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.																				.																											.	.	.	.	.	.
Template Sequence		T	S	W	G	E	H	E	G	.	.	.	.	.	.	.	.	V	F	T	A	A	D	R	G	F	Q	R	F	F	K	A	V	E	P	K	.	W	D	L	K	T	D	W	Q	I	I	S	E	I	A	T	R	M	G	Y	P	M	H	Y	N	N	T	.	.	.	.	.	.	Q	E	I	W	D	E	L	R	H	L	C	P
Template Known Secondary structure				B	T	T	B			.	.	.	.	.	.	.	.					T	T	S									S			S	.	S	S		B													T	T						S	S		.	.	.	.	.	.												T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.																				.																											.	.	.	.	.	.
Template SS confidence
		446	.	.	.	450	.	.	.									.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.		.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.							.	500	.	.	.	.	.	.	.	.	.	510
		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.													.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	F	A	D	Y	N	Q	R	I	R	H	P	G	G	F	H	.	.	.	.	.	.	.	.	.	.	.	.	L	I	N	A	A	A	E	R	R	W	M	T	P	S	G	K	A	N	F	I	T	S	K	G	L	L	E	D	P	S	S	A	F	N	S	K	L	V	M	A	T	V	R	S	H	D	Q	Y	N	T	T	I
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	Y	G	A	T	Y	E	K	M	G	E	L	G	F	I	Q	W	P	C	R	D	T	S	D	A	D	Q	G	T	S	Y	L	F	K	E	K	F	D	T	P	N	G	L	A	Q	F	F	T	C	D	W	V	A	P	I	D	K	L	T	D	E	Y	P	M	V	L	S	T	V	R	E	V	G	H	Y	S	C	R	S
Template Known Secondary structure		T	T	T	T							T	T	T					S					S	S	T	T			B		S	S	S		S	S			S	S	T	T	S													S	S				S	S	S										T	T			S	S		T
Template Predicted Secondary structure
Template SS confidence
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590
		658	.	660	.	.	.	.	.	.	.	.	.	670	.	.		.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.				.	.	.	730	.	.	.
Predicted Secondary structure																	.																																																							.	.	.
Query SS confidence																	.																																																							.	.	.
Query Sequence		Y	G	M	D	D	R	Y	R	G	V	F	G	Q	R	D	.	V	V	F	M	S	A	K	Q	A	K	I	C	R	V	K	N	G	E	R	V	N	L	I	A	L	T	P	D	G	K	R	S	S	R	R	M	D	R	L	K	V	V	I	Y	P	M	A	D	R	S	L	V	T	Y	.	.	.	F	P	E	S	N	H	M
Query Conservation																	.																																																							.	.	.
Alig confidence																	.																																																							.	.	.
Template Conservation
Template Sequence		M	T	G	N	C	A	A	L	A	A	L	A	D	E	P	G	Y	A	Q	I	N	T	E	D	A	K	R	L	G	I	E	D	E	A	L	V	W	V	H	S	R	K	G	K	I	I	T	R	A	Q	V	S	D	R	P	N	K	G	A	I	Y	M	T	Y	Q	W	W	P	E	Y	K	Y	C	A	V	R	V	E	P	I
Template Known Secondary structure		T	G	G	G	S					T	T			S	S														T			T	T								S	S											S	S	S		T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670
		734	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	L	D	N	H	D	P	L	S	G	I	P	G	Y	K	S	I	P	V	E	L	E	P	S	N
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		A	D	Q	R	A	A	E	Q	.	Y	V	I	D	E	Y	N	K	L	K	T	R	L	R	E	A	A
Template Known Secondary structure		S								.
Template Predicted Secondary structure										.
Template SS confidence
		689	690	.	.	.	.	.	.		.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.