Job Description P77561 Confidence 100.00% Date Thu Jan 5 12:30:35 GMT 2012 Rank 27 Aligned Residues 506 % Identity 17% Template c2fugC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus Resolution 3.30 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.				.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		F	D	C	P	G	C	A	W	P	D	P	K	H	S	A	S	F	D	I	C	E	N	G	A	K	A	I	A	W	E	V	T	D	K	Q	V	N	A	S	F	.	.	.	F	A	E	N	T	V	Q	S	L	L	T	W	G	D	H	E	L	E	A	A	G	R	L	T	Q	P	L	K	Y	D	A	V	S	D	C	Y	K
Query Conservation																																										.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.														.															.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.																																			.															.	.
Template Sequence		T	T	C	A	L	C	P	V	G	C	.	.	.	.	.	.	.	.	.	.	.	.	G	I	T	A	D	T	R	S	G	E	L	L	R	I	R	A	R	E	V	P	E	V	N	E	I	W	I	C	D	A	G	R	F	G	.	H	E	W	A	D	Q	N	R	L	K	T	P	L	V	.	.	R	K	E	G	R	L	V
Template Known Secondary structure						S	S	T	T			.	.	.	.	.	.	.	.	.	.	.	.								T	T											T	T	S	S		S									T	.	T					S	S				S				.	.			S	S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.																																			.															.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.													.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	S	W	Q	Q	A	F	D	E	I	G	A	R	L	Q	S	Y	S	D	P	N	Q	V	E	F	Y	T	S	G	R	T	S	N	E	A	A	F	L	Y	Q	L	F	A	R	E	Y	G	S	N	N	F	P	D	C	S	N	M	C	H	E	P	T	S	V	G	L	A	A	S	I	G	V	G	K	G	T	V	L	L
Query Conservation
Alig confidence																				.																																														.	.	.	.	.	.	.	.	.	.
Template Conservation																				.																																														.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	T	W	E	E	A	F	L	A	L	K	E	G	L	K	E	A	.	R	G	E	E	V	G	L	Y	L	A	H	D	A	T	L	E	E	G	L	L	A	S	E	L	A	K	A	L	K	T	P	H	L	D	F	Q	G	R	T	A	A	P	A	S	L	.	.	.	.	.	.	.	.	.	.	F	P	P	A	S	L
Template Known Secondary structure																	T	T	S	.	S	S	S	S							T	T																S	S	S						T	T			S	S		T	T	S	.	.	.	.	.	.	.	.	.	.	S		B
Template Predicted Secondary structure																				.																																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.											.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	F	E	K	C	D	L	V	I	C	I	G	H	N	P	G	T	N	H	P	R	M	L	T	S	L	R	A	L	V	K	R	G	A	K	M	I	A	I	N	P	L	Q	E	R	G	L	E	R	F	T	A	P	Q	N	P	F	E	M	L	T	N	S	E	T	Q	L	A	S	A	Y	Y	N	V	R	I	G	G	D
Query Conservation
Alig confidence															.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	D	L	L	Q	A	D	F	A	L	V	L	G	.	D	P	T	E	E	A	P	I	L	H	L	R	L	S	E	F	V	R	D	L	K	P	P	H	R	Y	N	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	P	F	A	D	L	Q	I	K	E	R	M	P	R	R
Template Known Secondary structure								S						S	.						S											T	T	T							B	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	S		S			T	T			S	S
Template Predicted Secondary structure															.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400		.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.																							.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	L	L	K	G	M	M	R	L	L	I	E	R	D	D	A	A	S	A	A	G	R	P	S	L	L	D	D	E	F	I	Q	T	H	T	V	G	F	D	E	L	R	R	D	V	L	N	S	E	W	K	D	I	E	R	I	S	G	L	S	Q	T	Q	I	A	E	L	A	D	A	Y	A	A	A	E	R	T	I	I
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	D	K	M	A	L	F	A	P	Y	R	A	P	L	M	K	W	A	A	I	H	E	V	H	R	P	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	E	I	L	L	A	L	L	G	D	K	E	G	S	E	M	V	A	K	A	K	E	A	W	E	K	A	K	N	P	V	L
Template Known Secondary structure		G	G	G						S	S			G	G	G	T	T		S							T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	S	S																	S	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.																				.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Y	G	M	G	I	T	Q	H	E	H	G	T	Q	N	V	Q	Q	L	V	N	L	L	L	M	K	G	N	I	G	K	P	G	A	G	I	C	P	L	R	G	H	S	N	V	Q	G	D	R	T	V	G	I	T	E	K	P	S	A	E	F	L	A	R	L	G	E	R	Y	G	F	T	P	P	H	A	P	G	H	A
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	G	A	G	V	L	Q	D	T	V	A	A	E	R	A	R	L	L	A	E	R	A	.	.	.	.	.	.	.	.	.	.	.	K	V	L	A	M	T	P	A	A	N	A	R	G	L	E	A	M	G	V	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	G	G	G																	.	.	.	.	.	.	.	.	.	.	.							S	S	T	T						T	T	T		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.												.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.		.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		A	I	A	S	M	Q	A	I	C	T	G	Q	A	R	A	L	I	C	M	G	G	N	F	A	L	A	M	P	D	R	E	A	S	A	V	P	L	T	Q	L	D	L	A	V	H	V	A	T	K	L	N	R	S	H	.	L	L	T	A	R	H	S	Y	I	L	P	V	L	G	R	S	E	I	D	M	Q	K	N	G	A
Query Conservation																																																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																												.				.	.	.															.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																																.	.	.															.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	G	A	K	G	A	S	W	D	E	P	G	A	L	Y	A	Y	Y	G	F	V	P	P	E	E	A	L	K	G	K	R	F	V	V	M	H	L	S	H	L	H	P	L	A	E	R	Y	A	.	.	.	H	V	V	L	P	A	P	T	F	Y	E	K	R	G	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.		S	S	S			S	S					S	S				S	S								T	T		S							S	S			T	T						.	.	.	S								G	G	G				.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																.	.	.															.	.	.	.	.
Template SS confidence
													552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.				.	600	.	.	.	.	.	.	.	.	.	610	.	.
		523	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	V	T	V	E	D	S	M	S	M	I	H	A	S	R	G	V	L	K	P	A	G	V	M	L	K	S	E	C	A	V	V	A	G	I	A	Q	A	A	L	P	Q	S	V	V	A	W	E	Y	L	V	E	D	Y	D	R	I	R	N	D	I	E	A	V	L	P	E	F	A	D	Y	N	Q	R	I	R	H	P	G
Query Conservation
Alig confidence		.	.	.																				.																							.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																				.																							.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	H	L	V	N	L	E	G	R	V	L	P	L	S	P	A	P	I	E	N	.	G	E	A	E	G	A	L	Q	V	L	A	L	L	A	E	A	L	G	V	R	P	P	.	.	F	R	L	H	L	E	A	Q	K	A	L	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.					T	T	S	B												.																		S				S	.	.		S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																				.																							.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.		.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.			.	.	.	.	.	.	660	.	.	.	.	.	.
		603	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	H	L	I	N	A	A	A	E	R	R	W	M	T	P	S	G	K	A	N	F	I	T	S	K	G	L	L	E	D	P	S	S	A	F	N	S	K	L	V	M	A	T	V	R	S	H	D	Q	Y	N	T	T	I	Y	G	M	D	D	R	Y	R	G	V	F	G	Q	R	D	V	V	F	M	S	A	K	Q	A	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	R	K	V	P	E	A	M	G	R	L	S	F	R	L	K	E	L	R	P	K	E	R	K	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Y	L	R	P	T	M	W	K	A	H	Q	A	V	G	K	A	Q	E	A	A	R	A	W	A	H	P	E	T	A	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	T	T				S	S		B																S	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S		G	G	G		S	T	T	S										S	S	S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
												667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.															.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.
		683	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	C	R	V	K	N	G	E	R	V	N	L	I	A	L	T	P	D	G	K	R	S	S	R	R	M	D	R	L	K	V	V	I	Y	P	M	A	D	R	S	L	V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	A	L	P	E	G	A	Q	V	A	V	E	T	P	F	G	R	V	E	A	R	V	V	H	R	E	D	V	P	K	G	H	L	Y	L	S	A	L	G	P	A	A
Template Known Secondary structure		T	T	T			T	T								T	T							S		S	S					S	S
Template Predicted Secondary structure
Template SS confidence
		725	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.