Job Description P77561 Confidence 38.27% Date Thu Jan 5 12:30:35 GMT 2012 Rank 142 Aligned Residues 50 % Identity 4% Template c1zc1A_ PDB info PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		642	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	M	A	T	V	R	S	H	D	Q	Y	N	T	T	I	Y	G	M	D	D	R	Y	R	G	V	F	G	Q	R	D	V	V	F	M	S	A	K	Q	A	K	I	C	R	V	K	N	G	E	R	V	N	L	I	A	L	T
Query Conservation
Alig confidence																		.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.
Template Sequence		F	K	L	T	A	N	E	T	G	R	V	T	H	G	G	V	.	.	.	.	.	.	.	L	E	F	I	A	E	E	G	R	V	Y	L	P	Q	W	M	M	E	T	L	G	I	Q	P	G	S	L	L	Q	I	S	S	T	D
Template Known Secondary structure							T	T	T									.	.	.	.	.	.	.						S	S														T			T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.								.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions