 |
Job Description | P77561 | Confidence | 86.23% | Date | Thu Jan 5 12:30:35 GMT 2012 |
Rank | 91 | Aligned Residues | 116 |
% Identity | 11% | Template | c1jscA_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:acetohydroxy-acid synthase; |
PDBTitle: crystal structure of the catalytic subunit of yeast2 acetohydroxyacid synthase: a target for herbicidal3 inhibitors
|
Resolution | 2.60 Å |
|
 |
  |   |
128 | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | |
. | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | |
. | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
| . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | Q | A | F | D | E | I | G | A | R | L | Q | S | Y | S | D | P | N | Q | V | E | F | Y | T | S | G | R | T | S | N | . |
E | A | A | F | L | Y | Q | L | F | A | R | E | Y | G | S | N | . |
N | F | P | D | C | S | N | M | C | H | E | P | T | S | V | G | L | A | A | S | I | G | V | G | K | G | T | V | L | L | E | D |
Query Conservation |   |
|
|
|
|   |   |
|
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   | . |
|   |   |   |
|   |   |   |
|   |   |   |   |
|
|   | . |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
| . | . |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
M | Q | S | I | N | K | A | A | D | L | I | N | L | A | K | K | P | . |
. |
V | L | Y | V | G | A | G | I | L | N | H | A | D | G | P | R | L | L | K | E | L | S | D | R | A | Q | I | P | V | T | T | T | L | Q | G | L | G | S | F | D | Q | E | D | P | K | S | L | D | M | L | G | M | H | G | C | A | T | A | N | L | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S |  | . | . |  |  |  |  |
| G | G | G | G | S | S | T | T |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |
| T | T | T | T | T | S | S |
| T | T | S | T | T |  |  |  |  |
| S | T | T | S |
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  | . | . |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
286 | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | |
|
. | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . |
  |
  |   |
206 | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | E | K | C | D | L | V | I | C | I | G | H | N | P | G | T | N | H | . |
. |
. |
. |
. |
P | R | M | L | T | S | L | R | A | L | V | K | R | G | A | K | M | I | A | I | N | P |
Query Conservation |   |
  |   |   |
|
|   |
|
|   |   |
|   |
|
|   |   |   |   | . | . | . | . | . |
|   |   |   |   |   |
|   |   |
|   |   |
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |
|
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |
Template Sequence |   |
V | Q | N | A | D | L | I | I | A | V | G | A | R | F | D | D | R | V | T | G | N | I | S | K | F | A | P | E | A | R | R | A | A | A | E | G | R | G | G | I | I | H | F | E | V |
Template Known Secondary structure |   |
 |  |  |
| S |  |  |  |  |  | S |
|
|
|
|  |  |  |  | S | S | G | G | G | S | S |  |  |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  | S |
Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
364 | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|