Job Description P46133 Confidence 10.36% Date Thu Jan 5 12:04:06 GMT 2012 Rank 6 Aligned Residues 275 % Identity 16% Template d2nwwa1 SCOP info Proton glutamate symport protein Proton glutamate symport protein Proton glutamate symport protein Resolution 3.20

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		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	S	G	I	S	T	E	A	A	A	A	F	N	P	Q	M	H	V	S	V	I	D	N	W	Y	F	M	A	S	S	V	V	V	L	T	I	V	G	G	L	I	T	D	K	I	I	E	P	R	L	G	Q	W	Q	G	N	S	D	E	K	L	Q	T	L	T	E	S	Q	R	F	G	L	R	I	A	G	V	V	S
Query Conservation
Alig confidence														.																																																																		.	.
Template Conservation														.																																																																		.	.
Template Sequence		V	F	A	S	L	V	V	G	A	A	S	I	.	S	P	A	R	L	G	R	V	G	V	K	I	V	V	Y	Y	L	L	T	S	A	F	A	V	T	L	G	I	I	M	A	R	L	F	N	P	G	A	G	I	H	L	A	V	G	G	Q	Q	F	Q	P	H	Q	A	P	P	L	V	H	I	L	L	D	I	V	.	.
Template Known Secondary structure								T	T	T		S		.	T	T	T	T																														S		S																										G	G	G	S	.	.
Template Predicted Secondary structure														.																																																																		.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.									.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.
Query Sequence		L	L	F	I	A	A	I	A	L	M	V	I	P	Q	N	G	I	L	R	D	P	I	N	H	T	V	M	P	S	P	F	I	K	G	I	V	P	L	I	I	L	F	F	F	V	V	S	L	A	Y	G	I	A	T	R	T	I	R	R	.	.	.	.	.	.	.	.	Q	A	D	L	P	H	L	M	I	E	P	M	K
Query Conservation																																																													.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	N	P	F	G	A	L	A	N	G	Q	V	L	P	T	I	F	F	A	I	I	L	G	I	A	I	T	Y	L	M	N	S	E	N	E	K	V	R	K	S	A	E	T	L	L	D	A	I	N	G	L	A	E	A	M	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S								S																					T	T		S		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																									139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	M	A	G	F	I	V	M	V	F	P	L	A	Q	F	V	A	M	F	N	W	S	N	M	G	K	F	I	A	V	G	L	T	D	I	L	E	S	S	G	L	S	G	I	P	A	F	V	G	L	A	L	L	S	S	F	L	C	M	F	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.
Template Sequence		K	I	V	N	G	V	M	Q	Y	A	P	I	G	V	F	A	L	I	.	.	.	.	.	.	A	Y	V	M	A	E	Q	G	V	H	V	V	G	E	L	A	K	V	T	A	A	V	Y	V	G	L	T	L	Q	I	L	L	V	Y	F	V	L	L	K	I	Y	G	I	D	P	I	S	F	I	K	H	A	K	D	A	M
Template Known Secondary structure								T	T	S										.	.	.	.	.	.							T	G	G	G			T																				T							T	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.							.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
							404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	S	G	S	A	I	W	S	I	L	A	P	I	F	V	P	M	F	M	L	L	G	F	H	P	A	F	A	Q	I	L	F	R	I	A	D	S	S	V	L	P	L	A	P	V	S	P	F	V	P	L	F	L	G	F	L	Q	R	Y	K	P	D	A	K	L	G	T	Y	Y	S	L	V	L	P	Y	P
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.									.	.																												.
Template Conservation															.	.																												.
Template Sequence		L	T	A	F	V	T	R	S	S	S	G	T	L	.	.	P	V	T	M	R	V	A	K	E	M	G	I	S	E	G	I	Y	S	F	T	L	P	L	G	A	T	I	.	N	M	D	G	T	A	L	Y	Q	G	V	C	T	F	F	I	A	N	A	L	G	S	H	L	T	V	G	Q	Q	L	T	I	V	L	T	A	V
Template Known Secondary structure										T	G	G	G		.	.									T	T	T			T	T	T					T	T	T	T	S	S	S	.																					T					S	S	T	T
Template Predicted Secondary structure															.	.																												.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		479	480	.	.								.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.
Query Sequence		L	I	F	L	.	.	.	.	.	.	.	V	V	W	L	L	M	L	L	A	W	Y	L	V	G	L	P	I
Query Conservation						.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	S	I	G	T	A	G	V	P	G	A	G	A	I	M	L	A	M	V	L	H	S	V	G	L	P	L
Template Known Secondary structure						T	T	S	S		T	T														T			T
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions