 |
| Job Description | P46133 | | Confidence | 4.88% | Date | Thu Jan 5 12:04:06 GMT 2012 |
| Rank | 37 | Aligned Residues | 24 |
| % Identity | 13% | Template | c1no7A_ |
| PDB info |
PDB header:viral protein | Chain: A: PDB Molecule:major capsid protein; |
PDBTitle: structure of the large protease resistant upper domain of2 vp5, the major capsid protein of herpes simplex virus-1
|
| Resolution | 2.90 Å |
|
| | |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure | |
|
|
|
|
|
|  | | | | | | | | | | | | |
|
|
|
|
|
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
S | I | P | S | S | S | Q | S | G | K | L | Y | G | W | V | E | R | I | G | N | K | V | P | H |
| Query Conservation | |
| | | | | | | | | | | | | | |
| | |
|
|
|
|
| |
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
| | | | | | | | | | | | | | | | | | | | | | | |
| Template Sequence | |
A | A | P | A | G | P | A | A | D | M | Q | Q | L | F | L | N | A | W | G | Q | R | L | A | H |
| Template Known Secondary structure | |
|
|
|
| S |
| | | | | | | | | | T | T | S | | | | | | S |
| Template Predicted Secondary structure | |
 |
|
|
|
|
| | | | | | | | | | | | | | |
|
|
|
|
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
492 | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
