Job Description P09377 Confidence 79.50% Date Thu Jan 5 11:02:16 GMT 2012 Rank 312 Aligned Residues 159 % Identity 8% Template c2fmyB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:carbon monoxide oxidation system transcription regulator PDBTitle: co-dependent transcription factor cooa from carboxydothermus2 hydrogenoformans (imidazole-bound form) Resolution 2.20 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	P	Y	T	I	T	G	G	T	V	C	F	V	R	D	H	D	R	H	L	Y	E	H	T	D	N	L	C	L	T	N	V	L	Y	R	S	P	D	R	F	Q	F	L	A	G	L	N	Q	L	L	P	Q	E	L	D	G	Q	Y	P	S	H	W	R	V	N	H	S	V	L	Q	Q	V	R	Q	L	V	A	Q	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	E	Q	R	Y	S	K	K	A	I	L	Y	T	P	N	T	E	R	N	L	V	F	L	V	K	S	G	R	V	R	V	Y	L	A	Y	E	D	K	E	F	T	L	A	I	L	E	A	G	D	I	F	C	T	H	T	R	A	F	I	Q	A	M	E	D	T	T	I	L	Y	T	D	I	R	N	F	Q	N	I	V
Template Known Secondary structure									T	T						S	S		S	S									S									S	S										T	T					S		S	S						S	S	S
Template Predicted Secondary structure
Template SS confidence
		1028	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.						.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.
Query Sequence		E	Q	Q	E	G	E	N	D	L	P	S	T	A	S	R	E	I	L	F	M	Q	L	L	L	L	L	R	K	S	S	L	Q	E	N	L	E	N	S	A	S	R	L	N	L	L	L	A	W	L	E	D	H	.	.	.	.	.	F	A	D	E	V	N	W	D	A	V	A	D	Q	F	S	L	S	L	R	T	L	H	R
Query Conservation																																																						.	.	.	.	.
Alig confidence																																																						.	.	.	.	.
Template Conservation
Template Sequence		V	E	F	P	A	F	S	L	N	M	V	K	V	L	G	D	L	L	K	N	S	L	T	I	I	N	G	L	V	F	K	D	A	R	L	R	L	A	E	F	L	V	Q	A	A	M	D	T	G	L	K	V	P	Q	G	I	K	L	E	L	G	L	N	T	E	E	I	A	L	M	L	G	T	T	R	Q	T	V	S	V
Template Known Secondary structure					T																										T																							T	T							S											T	S
Template Predicted Secondary structure
Template SS confidence
		1108	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.
		207	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	N	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1188	.	1190	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions