Job Description P0A887 Confidence 70.32% Date Thu Jan 5 11:07:11 GMT 2012 Rank 355 Aligned Residues 155 % Identity 11% Template c3pvcA_ PDB info PDB header:oxidoreductase, transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis Resolution 2.31 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.												.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query Sequence		T	V	L	D	L	A	G	G	T	G	D	L	T	A	K	F	S	R	L	V	.	.	.	.	.	.	.	.	.	.	.	G	E	T	G	K	V	V	L	A	D	.	.	.	I	N	E	S	M	L	K	M	G	R	E	K	L	R	N	I	G	V	I	G	N	V	E	Y	V	Q	A	N	A	E	A	L	P	F	P	D
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.											.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation
Template Sequence		I	F	A	E	T	G	F	G	T	G	L	N	F	L	T	L	W	R	D	F	A	L	F	R	Q	Q	S	P	N	A	T	L	R	R	L	H	Y	I	S	F	E	K	Y	P	L	H	V	A	D	L	A	S	A	H	A	R	W	P	E	L	A	S	F	A	E	Q	L	R	A	Q	W	P	L	P	L	A	G	C	H	R
Template Known Secondary structure									T	T	S																		T	T	S	S											S	S												T	T		G	G	G										T						S
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	F	D	C	I	T	I	S	F	G	L	R	N	V	T	D	K	D	K	A	L	R	S	M	Y	R	V	L	K	P	G	G	R	L	L	V	L	E	F	S	K	P	I	I	E	P	L	S	K	A	Y	D	A	Y	S	F	H	V	L	P	R	I	G	S	L	V	A	N	D	A	D	S	Y	R	Y	L	A	E	S
Query Conservation
Alig confidence														.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	L	A	D	G	A	I	T	L	D	L	.	W	F	G	D	V	N	T	L	L	P	T	L	D	D	S	L	N	N	Q	V	D	A	W	F	L	D	G	F	A	P	N	P	D	X	W	N	E	Q	L	F	N	A	X	A	R	X	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	G	G	T
Template Known Secondary structure					T	T	T	T						.			S						G	G	G			G	G	G	T	T									S	S					T	T		S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.																200	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	M	H	P	D	Q	D	T	L	K	A	M	M	Q	D	A	G	F	E	S	V	D	Y	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	S	T	F	T	A	A	G	F	V	R	R	G	L	Q	Q	A	G	F	N	V	T	K	V	K
Template Known Secondary structure					S													T	T
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions