Job Description P0A887 Confidence 98.76% Date Thu Jan 5 11:07:11 GMT 2012 Rank 234 Aligned Residues 151 % Identity 23% Template c3bwbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution Resolution 2.50 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110						.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																																																									.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.
Query Sequence		I	D	C	S	G	V	R	R	G	Q	T	V	L	D	L	A	G	G	T	G	D	L	T	A	K	F	S	R	L	V	G	E	T	G	K	V	V	L	A	D	I	N	E	S	M	L	K	M	G	R	E	K	L	R	N	.	.	.	.	.	I	G	V	I	G	N	V	E	Y	V	Q	A	N	A	E	A	L	P	F	P
Query Conservation																																																									.	.	.	.	.
Alig confidence																																.																									.	.	.	.	.
Template Conservation																																.
Template Sequence		T	S	L	C	S	H	P	K	P	E	R	V	L	I	I	G	G	G	D	G	G	V	L	R	E	V	L	R	H	G	.	T	V	E	H	C	D	L	V	D	I	D	G	E	V	X	E	Q	S	K	Q	H	F	P	Q	I	S	R	S	L	A	D	P	R	A	T	V	R	V	G	D	G	L	A	F	V	R	Q	T	P
Template Known Secondary structure					T	T	S	S											T	T	S							T	T		T	.	T									S																	G	G	G	G		T	T						S								T	S
Template Predicted Secondary structure																																.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.							150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		D	N	T	F	D	C	I	T	I	S	F	G	L	R	N	V	T	D	K	.	.	.	.	.	.	D	K	A	L	R	S	M	Y	R	V	L	K	P	G	G	R	L	L	V	L	E	F	S	K	P	I	I	E	P	L	S	K	A	Y	D	A	Y	S	F	H	V	L	P	R	I	G	S	L	V	A	N	D	A	D	S
Query Conservation																					.	.	.	.	.	.
Alig confidence											.	.	.	.	.						.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	N	T	Y	D	V	V	I	I	.	.	.	.	.	D	T	T	D	P	A	S	K	L	F	G	E	A	F	Y	K	D	V	L	R	I	L	K	P	D	G	I	C	C	N	Q	G	E	S	I	W	L	D	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T								.	.	.	.	.			S						S	S																									T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.						.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240						.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																						.	.	.	.	.
Query SS confidence																																						.	.	.	.	.
Query Sequence		Y	R	Y	L	A	E	S	I	R	M	H	P	D	Q	D	T	L	K	A	M	M	Q	D	A	G	F	E	S	V	D	Y	Y	N	L	T	A	.	.	.	.	.	G	V	V	A	L	H	R	G	Y	K
Query Conservation																																						.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	L	I	E	K	X	S	R	F	I	R	E	T	G	F	A	S	V	Q	Y	A	L	X	H	V	P	T	Y	P	C	G	S	I	G	T	L	V	C	S	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.													T		S										T	T	S	T	T	S									S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions