Job Description P0A887 Confidence 70.32% Date Thu Jan 5 11:07:11 GMT 2012 Rank 354 Aligned Residues 97 % Identity 18% Template c2hwkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:helicase nsp2; PDBTitle: crystal structure of venezuelan equine encephalitis2 alphavirus nsp2 protease domain Resolution 2.45 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	Q	T	V	L	D	L	A	G	G	T	G	D	L	T	A	K	F	S	R	L	V	G	E	T	G	K	V	V	L	A	D	I	N	E	S	M	L	K	M	G	R	E	K	L	R	N	I	G	V	I	G	N	V	E	Y	V	Q	A	N	A	E	A	L	P	F	P	D	N	T	F	D	C	I	T	I	S	F	G
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Template Sequence		K	G	R	T	V	L	V	V	G	E	K	L	.	.	.	.	.	.	.	.	.	.	S	V	P	G	K	M	V	D	W	L	S	D	R	P	E	A	T	F	R	A	R	L	D	L	G	I	P	G	D	V	P	K	Y	D	I	I	F	V	N	V	R	T	P	.	.	.	.	.	.	Y	K	Y	H	H	Y	Q	Q	C
Template Known Secondary structure		S		S							S			.	.	.	.	.	.	.	.	.	.			T	T	S							S	S	T	T		S					G	G	G		S		T	T	S														.	.	.	.	.	.			S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Template SS confidence
		630	.	.	.	.	.	.	.	.	.	640	.											.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.							.	.	.	.	.	690	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	N	V	T	D	K	D	K	A	L	R	S	M	Y	R	V	L	K	P	G	G	R	L	L	V	L	E	F	S	K	P	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	H	A	I	K	L	S	M	L	T	K	K	A	C	L	H	L	N	P	G	G	T	C	V	S	I	G	Y	G	Y	A	D
Template Known Secondary structure											T					G	G	G																S
Template Predicted Secondary structure
Template SS confidence
		694	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions