Job Description P45758 Confidence 100.00% Date Thu Jan 5 12:03:35 GMT 2012 Rank 1 Aligned Residues 197 % Identity 51% Template c3ezjA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:general secretion pathway protein gspd; PDBTitle: crystal structure of the n-terminal domain of the secretin gspd from2 etec determined with the assistance of a nanobody Resolution 2.80 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	G	A	N	F	N	N	A	D	I	R	Q	F	V	E	I	V	G	Q	H	L	G	K	T	I	L	I	D	P	S	V	Q	G	T	I	S	V	R	S	N	D	T	F	S	Q	Q	E	Y	Y	Q	F	F	L	S	I	L	D	L	Y	G	Y	S	V	I	T	L	D	N	G	F	L	K	V	V	R	S	A	N	V
Query Conservation
Alig confidence																														.	.	.																																															.	.	.
Template Conservation																														.	.	.																																															.	.	.
Template Sequence		T	F	T	A	N	F	K	D	T	D	L	K	S	F	I	E	T	V	G	A	N	L	N	K	T	I	I	M	.	.	.	V	Q	G	A	V	S	I	R	T	M	T	P	L	N	E	R	Q	Y	Y	Q	L	F	L	N	L	L	E	A	Q	G	Y	A	V	V	P	M	E	N	D	V	L	K	V	V	K	S	.	.	.
Template Known Secondary structure			B																					T						.	.	.										S	S		B																T	T							T	T	T								.	.	.
Template Predicted Secondary structure																														.	.	.																																															.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	T	S	P	G	M	I	A	D	S	S	R	P	G	V	G	D	E	L	V	T	R	I	V	P	L	E	N	V	P	A	R	D	L	A	P	L	L	R	Q	M	M	D	A	G	S	V	G	N	V	V	H	Y	E	P	S	N	V	L	I	L	T	G	R	A	S	T	I	N	K	L	I	E	V	I	K	R	V	D	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	E	M	V	T	K	V	V	P	V	R	N	V	S	V	R	E	L	A	P	I	L	R	Q	M	I	D	S	A	G	S	G	N	V	V	N	Y	D	P	S	N	V	I	M	L	T	G	R	A	S	V	V	E	R	L	T	E	V	I	Q	R	V	D	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S	S		G	G	G	T													S	S							T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	T	E	K	Q	Q	I	I	H	L	E	Y	A	S	A	E	D	L	A	E	I	L	N	Q	L	I	S	E	S	H	G	K	S	Q	M	P	A	L	L	S	A	K	I	V	A	D	K	R	T	N	S	L	I	I	S	G	P	E	K	A	R	Q	R	I	T	S	L	L	K	S	L	D
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	N	R	T	E	E	V	I	P	L	D	N	A	S	A	S	E	I	A	R	V	L	E	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	I	V	A	D	E	R	T	N	S	V	I	V	S	G	D	P	A	T	R	D	K	M	R	R	L	I	R	R	L	D
Template Known Secondary structure			T	T									S	S	S											T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T	T																					T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190																.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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