 |
Job Description | P0AGB6 | Confidence | 98.78% | Date | Thu Jan 5 11:28:41 GMT 2012 |
Rank | 20 | Aligned Residues | 61 |
% Identity | 13% | Template | d1ttya_ |
SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma4 domain
|
Resolution | UNK |
|
 |
  |   |
129 | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | |
|
|
|
. | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | |
|
|
|
|
. | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
Query Sequence |   |
Q | I | V | F | R | T | I | E | S | L | P | E | D | L | R | M | A | I | T | L | R | E | . |
. |
. |
. |
L | D | G | L | S | Y | E | E | I | A | A | I | M | D | C | P | V | G | T | V | R | S | R | I | F | R | A | R | E | A | I | D | . |
. |
. |
. |
. |
N | K | V | Q | P | L | I |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   | . | . | . | . |   |   |
|   |
|   |   |
|
|
|   |   |
|
|
|
|   |   |   |
|   |   |   |
|   |
|
|
|   |   |
|
| . | . | . | . | . |   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|   |   |
|   |
|
|
|
|   |
|
|   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |
|
|
|   |   |
|
|
|
|   |   |   |
|
|   |   |   |   |
|
|
|   |
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|
Template Sequence |   |
E | E | L | E | K | V | L | K | T | L | S | P | R | E | A | M | V | L | R | M | R | Y | G | L | L | D | G | K | P | K | T | L | E | E | V | G | Q | Y | F | N | V | T | R | E | R | I | R | Q | I | E | V | K | A | L | R | K | L | R | H | P | S | R | S | K | Y | L | K | S | L | L |
Template Known Secondary structure |   |
S |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  | T | T | T | T | S | S |
|
|
|  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | B | T | T | B | S | S |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
322 | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . |
  |
Send structure to FirstGlance for more viewing options
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|