Job Description P0AGB6 Confidence 99.66% Date Thu Jan 5 11:28:41 GMT 2012 Rank 6 Aligned Residues 117 % Identity 21% Template c3mzyA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a Resolution 2.50 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		P	D	V	V	Q	E	A	F	I	K	A	Y	R	A	L	D	S	F	R	G	D	S	.	A	F	Y	T	W	L	Y	R	I	A	V	N	T	A	K	N	Y	L	V	A	Q	G	R	R	P	P	S	S	D	V	D	A	I	E	A	E	N	F	E	S	G	G	A	L	K	E	I	S	N	P	E	N	L	M	L	S	E
Query Conservation																								.
Alig confidence																								.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	D	L	V	Q	E	G	I	L	G	L	L	K	A	I	K	F	Y	D	E	T	K	S	S	F	S	S	F	A	F	L	C	I	R	R	E	X	I	S	A	I	R	K	A	N	T	Q	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	Y	L	L	K
Template Known Secondary structure			T	T																	T	T	T	S																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.																										.	.	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	R	Q	I	V	F	R	T	I	E	S	L	P	E	D	L	R	M	A	I	T	L	R	E	L	D	G	L	S	Y	E	E	I	A	A	I	M	D	C	P	V	G	T	V	R	S	R	I	F	R	A	R	E	A	I	D	N	K	V	Q	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	I	E	E	F	K	K	F	S	E	N	N	F	S	K	F	E	K	E	V	L	T	Y	L	I	R	G	Y	S	Y	R	E	I	A	T	I	L	S	K	N	L	K	S	I	D	N	T	I	Q	R	I	R	K	K	S	E	E	W	I	K	E	E
Template Known Secondary structure															S												T	T	T											T
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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