 |
| Job Description | P0AGB6 | | Confidence | 59.15% | Date | Thu Jan 5 11:28:41 GMT 2012 |
| Rank | 494 | Aligned Residues | 27 |
| % Identity | 15% | Template | c2kt0A_ |
| PDB info |
PDB header:transcription regulation | Chain: A: PDB Molecule:homeobox protein nanog; |
PDBTitle: solution structure of human stem cell transcription factor nanog2 homeodomain fragment
|
| Resolution | UNK |
|
| | |
157 | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . |
| Predicted Secondary structure | |
 | | | | | | |
|
|
| | | | | | | | | | | | | | | | | |
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
E | E | I | A | A | I | M | D | C | P | V | G | T | V | R | S | R | I | F | R | A | R | E | A | I | D | N |
| Query Conservation | |
|
|
|
| | |
|
|
|
| | | |
| | | |
| |
|
|
| | |
|
| |
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
| |
|
| | | | |
| | | |
|
| | |
|
|
|
|
|
| |
| |
|
|
| Template Sequence | |
Q | E | L | S | N | I | L | N | L | S | Y | K | Q | V | K | T | W | F | Q | N | Q | R | M | K | S | K | R |
| Template Known Secondary structure | |
| | | | | | T | T |
|
| | | | | | | | | | | | | | T | T | T | S |
| Template Predicted Secondary structure | |
| | | | | | |
|
|
| | | | | | | | | | | | | | | | | |
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
53 | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
