Job Description P0AGB6 Confidence 98.43% Date Thu Jan 5 11:28:41 GMT 2012 Rank 24 Aligned Residues 131 % Identity 21% Template c1ku2A_ PDB info PDB header:transcription Chain: A: PDB Molecule:sigma factor siga; PDBTitle: crystal structure of thermus aquaticus rna polymerase sigma2 subunit fragment containing regions 1.2 to 3.1 Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																					.																							.	.
Query SS confidence																																					.																							.	.
Query Sequence		V	E	R	V	Q	K	G	D	Q	K	A	F	N	L	L	V	V	R	Y	Q	H	K	V	A	S	L	V	S	R	Y	V	P	S	G	D	.	V	P	D	V	V	Q	E	A	F	I	K	A	Y	R	A	L	D	S	F	R	G	D	.	.	S	A	F	Y	T	W	L	Y	R	I	A	V	N	T	A	K	N	Y	L	V
Query Conservation																																					.																							.	.
Alig confidence																																					.																							.	.
Template Conservation
Template Sequence		Y	L	H	I	A	R	E	G	E	A	A	R	Q	H	L	I	E	A	N	L	R	L	V	V	S	I	A	K	K	Y	T	G	R	G	L	S	F	L	D	L	I	Q	E	G	N	Q	G	L	I	R	A	V	E	K	F	E	Y	K	R	R	F	K	F	S	T	Y	A	T	W	W	I	R	Q	A	I	N	R	A	I	A
Template Known Secondary structure																			T	T										T	T		S	S	S	S																						G	G	G		S																			T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		A	Q	G	R	R	P	P	S	S	D	V	D	A	I	E	A	E	N	F	E	S	G	G	A	L	K	E	I	S	N	P	E	N	L	M	L	S	E	E	L	R	Q	I	V	F	R	T	I	E	S	L	P	E	D	L	R	M	A	I	T	L	R	E	L	D	G	L	S	Y	E	E	I	A	A	I	M	D	.	.	C
Query Conservation																																																																															.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	Q	A	R	T	I	R	I	P	V	H	M	V	E	T	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	S	R	T	A	R	Q	L	Q	Q	E	L	G	R	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Y	E	E	I	A	E	A	M	G	P	G	W
Template Known Secondary structure		T	S																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.																			.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.																.	.	.	.	.	.	.	.	310	.	.	.	.
		166	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	G	T	V	R	S	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	K	R	V	E	E	T	L
Template Known Secondary structure										G
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions