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Job DescriptionP77721
Confidence98.54%DateThu Jan 5 12:32:05 GMT 2012
Rank20Aligned Residues212
% Identity16%Templatec2w48D_
PDB info PDB header:transcriptionChain: D: PDB Molecule:sorbitol operon regulator; PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70....
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Query Sequence  KDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLTRTYGGAVLNTAMLTENIHFYKRAS. . . . . . . . .
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Template Sequence  DIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVT. . . . . . IAINYDYNENLWLEQQLKQKFGLKEAV
Template Known Secondary structure  TS


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   6...10.........20.........30.........40.........50.. .......60.........70.........
 
   75....80.........90 .........100.........110.........120.........130... ......140..
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Query Sequence  . . . . . . . SFYEEKQLIARKALPF. . . . IDNKTTMAADSSSTVMELLKLLQDRSGLTLLTNSAEAIHVLAQ. SEIKVVSTG
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Template Sequence  VASSDGLLEEEQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRS. . . . . . . . . . . . . . . . QSRQVICVPII
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   80.........90.........100.........110.........120.........130.. .......140...
 
   143......150.... .....160.........170.........180.........190.........200.........210.........220
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Query Sequence  GELNKNTLSLQG. . RITKEIIRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFVQL
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Template Sequence  GGPSGKLESRYHVNTLTYGAAARLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDV. . . . . . . . . . . ALVGI
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   144.....150.........160.........170.........180.........190.........200....... ..210..
 
   221........230.........240........
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Query Sequence  ADFSHINYIITDKSPGAEWIAFCKDNNI
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Template Sequence  GSPAIRDGANWHAFYGSEESDDLNARHV
Template Known Secondary structure  B
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   213......220.........230.........240
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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