Job Description P18843 Confidence 99.72% Date Thu Jan 5 11:37:11 GMT 2012 Rank 21 Aligned Residues 183 % Identity 16% Template c2c5sA_ PDB info PDB header:rna-binding protein Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii; PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain Resolution 2.5 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.								.	.	.	.	.	.	.	110
Predicted Secondary structure																																																																			.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.
Query Sequence		P	F	I	K	S	L	V	L	G	I	S	G	G	Q	D	S	T	L	A	G	K	L	C	Q	M	A	I	N	E	L	R	L	E	T	G	N	E	S	L	Q	F	I	A	V	R	L	P	Y	G	V	Q	A	D	E	Q	D	C	Q	D	A	I	A	F	I	Q	.	.	.	.	.	.	.	P	D	R	V	L	T	V	N
Query Conservation																																																																			.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	G	G	K	V	M	V	L	L	S	G	G	I	D	S	P	V	A	A	Y	L	T	M	K	.	.	.	.	.	.	.	.	.	.	.	R	G	V	S	V	E	A	V	H	F	H	S	P	P	F	T	S	E	R	A	K	Q	K	V	I	D	L	A	Q	E	L	T	K	Y	C	K	R	V	T	L	H	L	V	P
Template Known Secondary structure		T	T	T									S	S	S												.	.	.	.	.	.	.	.	.	.	.	B	T											T	T	T	S																G	G	G	S	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.												200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.						.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.
Predicted Secondary structure																																																						.	.	.	.	.																					.
Query SS confidence																																																						.	.	.	.	.																					.
Query Sequence		I	K	G	A	V	L	A	S	E	Q	A	L	R	E	A	G	I	E	L	S	D	F	V	R	G	N	E	K	A	R	E	R	M	K	A	Q	Y	S	I	A	G	M	T	S	G	V	V	V	G	T	D	H	.	.	.	.	.	A	A	E	A	I	T	G	F	F	T	K	Y	G	D	G	G	T	D	I	N	.	P	L
Query Conservation																																																						.	.	.	.	.																					.
Alig confidence																		.	.	.	.	.	.	.																														.	.	.	.	.																					.
Template Conservation																		.	.	.	.	.	.	.
Template Sequence		F	T	E	V	Q	K	T	I	N	K	E	I	P	S	S	Y	.	.	.	.	.	.	.	S	M	T	V	M	R	R	M	M	M	R	I	T	E	R	I	A	E	E	R	N	A	L	A	I	T	T	G	E	S	L	G	Q	V	A	S	Q	T	L	D	S	M	H	T	I	N	E	V	T	N	Y	P	V	I	R	P	L
Template Known Secondary structure													S		G	G	G	.	.	.	.	.	.	.																				T	T										S	S	S	T	T	S										G	G	G			S					T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.								260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	L	N	K	R	Q	G	K	Q	L	L	A	A	L	A	C	P	E	H	L	Y	K	K	A	P	T	A	D	L	E	D	D	R	P	S	L	P	D	E	V	A	L	G	V	T	Y	D	N	I	D	D	Y	L	E	G	K	N	V
Query Conservation
Alig confidence																				.																.	.	.							.
Template Conservation																				.																.	.	.							.
Template Sequence		I	T	M	D	K	L	E	I	I	K	I	A	E	E	I	G	T	Y	.	D	I	S	I	R	P	Y	K	P	K	R	E	K	A	N	.	.	.	R	F	E	A	K	Y	.	D	F	T	P	L	I	D	E	A	V	A	N	K	E	T
Template Known Secondary structure		T	T													T	T			.				T	S											.	.	.				T	T	S	.
Template Predicted Secondary structure																				.																.	.	.							.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.				350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions