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Job DescriptionP27848
Confidence99.02%DateThu Jan 5 11:44:21 GMT 2012
Rank70Aligned Residues146
% Identity23%Templatec2zxeA_
PDB info PDB header:hydrolase/transport proteinChain: A: PDB Molecule:na, k-atpase alpha subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40.........50........ .60.........70..
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Query Sequence  HTLSPYAKETLKLLTARGINFVFATGRHHVDVGQIRDNLEI. . . . . . . . . . . . . . . . . . . . . . . . . KSYMITSNGARVHD
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Template Sequence  DPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDL. .
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B
TTTT

SS
TSS
TT


TT

GGGS
GGG

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   593......600.........610.........620.........630.........640.........650.........660.........670
 
   73......80.........90.........100.........110.........120.........130.........140.........150..
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Query Sequence  LDGNLIFAHNLDRDIASDLFGVVNDNPDIITNVYRDDEWFMNRHRPEEMRFFKEAVFQYALYEPGLLEPEGVSKVFFTCD
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Template Sequence  . . . . . . . . KDLSTEVLDDILHYHTEI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ........TT


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   671........680........
 
   153......160.........170.........180.........190.........200.........210.........220.........230..
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Query Sequence  SHEQLLPLEQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMG
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VFARTSPQQKLIIVEGCQRQGA. . . . IVAVTGDGVNDSPALKKADIGVAMG
Template Known Secondary structure  .............................S

TT
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SGGGSSS
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   689690.........700.........710 .........720.........730.....
 
   233......240.........250.........260..
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Query Sequence  . SAHQRLKDLHPELEVIGTNADDAVPHYLRK
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Template Sequence  ISGSDVSKQAAD. . MILLDDNFASIVTGVEE
Template Known Secondary structure  SS


S..TT

T
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   736...740....... ..750.........760....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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