Job Description P77396 Confidence 73.54% Date Thu Jan 5 12:28:33 GMT 2012 Rank 381 Aligned Residues 155 % Identity 8% Template c2oz6A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:virulence factor regulator; PDBTitle: crystal structure of virulence factor regulator from pseudomonas2 aeruginosa in complex with camp Resolution 2.80 Å

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		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		G	N	L	L	E	A	K	Q	Q	R	L	V	E	G	E	.	.	.	.	M	L	F	I	P	A	R	A	A	N	L	P	V	N	N	K	P	V	M	L	L	S	L	V	F	A	P	T	W	L	G	L	S	F	Y	D	S	R	T	T	S	L	L	H	P	A	R	Q	I	Q	L	P	S	L	Q	R	G	E	G	E	A
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.
Template Conservation
Template Sequence		R	R	R	Y	T	A	K	S	T	I	I	Y	A	G	D	R	C	E	T	L	F	F	I	I	K	G	S	V	T	I	L	I	E	D	D	D	G	R	E	M	I	I	G	Y	L	N	S	G	D	F	F	G	E	L	G	L	F	E	Q	E	R	S	A	W	V	R	A	K	V	E	C	E	V	A	E	I	S	Y	A	K
Template Known Secondary structure							T	T						T	T	S	B										S									T	T	S										T	T				S		T	T	T				B			S					S	S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.										.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.
Query Sequence		M	L	T	A	L	T	H	L	S	R	S	P	L	E	Q	N	I	I	Q	P	L	V	L	S	L	L	H	L	C	R	S	V	V	N	M	P	P	G	N	S	Q	P	R	G	D	F	L	Y	H	S	I	C	N	W	V	Q	D	N	Y	.	.	.	.	.	.	.	.	.	A	Q	P	L	T	R	E	S	V	A	Q	F
Query Conservation																																																													.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.
Template Sequence		F	R	E	L	S	Q	Q	D	.	.	.	.	.	.	S	E	I	L	Y	T	L	G	S	Q	M	A	D	R	L	R	K	T	T	R	K	V	G	D	L	A	F	L	D	V	T	G	R	V	A	R	T	L	L	D	L	C	Q	Q	P	D	A	M	T	H	P	D	G	M	Q	I	K	I	T	R	Q	E	I	G	R	I
Template Known Secondary structure										.	.	.	.	.	.																																										T	T	S	T	T					T	T
Template Predicted Secondary structure										.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.							.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		207	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	I	T	P	N	H	L	S	K	L	F	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	C	S	R	E	M	V	G	R	V	L	K	S
Template Known Secondary structure			T	S
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions