Job Description P77396 Confidence 97.34% Date Thu Jan 5 12:28:33 GMT 2012 Rank 69 Aligned Residues 80 % Identity 9% Template c2fqpD_ PDB info PDB header:metal binding protein Chain: D: PDB Molecule:hypothetical protein bp2299; PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																															.																	.	.
Query SS confidence																															.																	.	.
Query Sequence		G	L	V	L	N	P	Q	L	L	G	R	V	W	F	A	S	Q	P	A	S	L	P	V	G	S	L	C	I	D	.	F	P	R	L	D	I	V	L	R	G	E	Y	G	N	L	L	.	.	E	A	K	Q	Q	R	L	V	E	G	E	M	L	F	I	P	A	R	A	A	N	L	P	V	N	N	K	P	V	M	L	L
Query Conservation																															.																	.	.
Alig confidence																						.									.																	.	.
Template Conservation																						.
Template Sequence		T	V	Q	I	D	N	E	R	V	K	V	T	E	W	R	F	P	P	G	G	.	E	T	G	W	H	R	H	S	X	D	Y	V	V	V	P	X	T	T	G	P	L	L	L	E	T	P	E	G	S	V	T	S	Q	L	T	R	G	V	S	Y	T	R	P	E	G	V	E	H	N	V	I	N	P	S	D	T	E	F	V
Template Known Secondary structure								S	S										T	T		.	B			S					S							S	S									T	T									T	T							T	T									S	S	S
Template Predicted Secondary structure																						.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		96	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	V	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	E	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions