Job Description P15640 Confidence 100.00% Date Wed Jan 25 15:20:39 GMT 2012 Rank 23 Aligned Residues 381 % Identity 17% Template c3u9sE_ PDB info PDB header:ligase Chain: E: PDB Molecule:methylcrotonyl-coa carboxylase, alpha-subunit; PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc) 750 kd holoenzyme, coa complex Resolution 3.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.									.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.
Query Sequence		K	V	L	V	I	G	N	G	G	R	E	H	A	L	A	W	K	A	A	Q	S	P	L	V	E	T	V	F	V	A	P	G	N	A	G	T	A	L	E	P	A	L	Q	N	V	A	I	.	.	.	.	.	.	.	.	G	V	T	D	I	P	A	L	L	D	F	A	Q	N	E	K	I	D	L	T	I	V	G	P	E
Query Conservation																																																	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	L	V	A	N	R	G	E	I	A	C	R	V	M	R	S	A	R	A	L	G	I	G	S	V	A	V	H	S	D	I	D	R	H	A	R	H	V	A	E	A	D	I	A	V	D	L	G	G	A	K	P	A	D	S	Y	L	R	G	D	R	I	I	A	A	A	L	A	S	G	A	Q	A	I	H	P	G	Y	G
Template Known Secondary structure																						T	T									S	T	T	S	S		S	T	T	T	S	S	S								S	S	S	T	T	T	T	T												T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		74	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure				.																																																	.	.
Query SS confidence				.																																																	.	.
Query Sequence		A	P	.	L	V	K	G	V	V	D	T	F	R	A	A	G	L	K	I	F	G	P	T	A	G	A	A	Q	L	E	G	S	K	A	F	T	K	D	F	L	A	R	H	K	I	P	T	A	E	Y	Q	.	.	N	F	T	E	V	E	P	A	L	A	Y	L	R	E	K	G	A	P	I	V	I	K	A	D	G	L	A
Query Conservation				.																																																	.	.
Alig confidence				.																																																	.	.																								.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		F	L	S	E	N	A	D	F	A	R	A	C	E	E	A	G	L	L	F	L	G	P	P	A	A	A	I	D	A	M	G	S	K	S	A	A	K	A	L	M	E	E	A	G	V	P	L	V	P	G	Y	H	G	E	A	Q	D	L	E	T	F	R	R	E	A	G	R	I	G	Y	P	V	L	L	K	A	.	.	.	.
Template Known Secondary structure		T	T	S	S		T								T	T	T				S	S	S								T	T	S										T	T	T									S	S				T	T								T	T		S							.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		A	G	K	G	V	I	V	A	M	T	L	E	E	A	E	A	A	V	H	D	M	L	A	G	N	A	F	G	D	A	G	H	R	I	V	I	E	E	F	L	D	G	.	E	E	A	S	F	I	V	M	V	D	G	E	H	V	L	P	M	A	T	S	Q	D	H	K	R	V	G	D	K	D	T	G	P	N	T	G	G
Query Conservation																																												.
Alig confidence		.	.																				.	.	.	.	.	.	.	.														.																									.	.	.	.	.	.
Template Conservation		.	.																				.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Sequence		.	.	A	A	M	K	V	V	E	R	E	A	E	L	A	E	A	L	S	S	A	.	.	.	.	.	.	.	.	Q	R	A	R	M	L	V	E	K	Y	L	L	K	P	R	H	V	E	I	Q	V	F	A	D	R	H	G	H	C	L	Y	L	N	E	R	D	C	S	.	.	.	.	.	.	I	Q	R	R	H	Q	K
Template Known Secondary structure		.	.								S	S	G	G	G	T					S		.	.	.	.	.	.	.	.												S	S		B										T	T	S												.	.	.	.	.	.		B	S	S	S	S	B
Template Predicted Secondary structure		.	.																				.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template SS confidence
				207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.									.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.							.	.	.	.	.	.	270
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	A	Y	S	P	A	P	V	V	T	D	D	V	H	Q	R	T	M	E	R	I	I	W	P	T	V	K	G	M	A	A	E	G	N	T	Y	T	G	F	L	Y	A	G	L	M	I	D	K	Q	G	N	P	K	V	I	E	F	N	C	R	F	G	D	P	E	T	Q	P	I	M	L	R	M	K	S	D	L	V	E
Query Conservation
Alig confidence																.	.	.	.																	.	.																																.
Template Conservation																.	.	.	.																	.	.																																.
Template Sequence		V	V	E	E	A	P	A	P	G	L	G	A	E	L	.	.	.	.	R	R	A	M	G	E	A	A	V	R	A	A	Q	A	I	G	.	.	Y	V	G	A	G	T	V	E	F	L	L	D	E	R	G	Q	F	F	F	M	E	M	N	T	R	L	Q	V	E	H	P	.	V	T	E	A	I	T	G	L	D	L	V	A
Template Known Secondary structure							S		S	S						.	.	.	.															T	T	.	.			S								B		T	T	S									S	S			T	T			.							T
Template Predicted Secondary structure																.	.	.	.																	.	.																																.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.					.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.		.	.
Predicted Secondary structure											.	.	.																																								.																										.
Query SS confidence											.	.	.																																								.																										.
Query Sequence		L	C	L	A	A	C	E	S	K	.	.	.	L	D	E	K	T	S	E	W	D	E	R	A	S	L	G	V	V	M	A	A	G	G	Y	P	G	D	Y	R	T	G	D	V	I	H	G	L	P	L	E	.	E	V	A	G	G	K	V	F	H	A	G	T	K	L	A	D	D	E	Q	V	V	T	N	G	G	.	R	V
Query Conservation											.	.	.																																								.																										.
Alig confidence											.	.	.																																								.											.	.	.													.
Template Conservation																																																																.	.	.
Template Sequence		W	Q	I	R	V	A	R	G	E	A	L	P	L	T	Q	E	Q	V	P	L	N	G	H	A	I	E	V	R	L	Y	A	E	D	P	E	G	D	F	L	P	A	S	G	R	L	M	L	Y	R	E	A	A	A	G	P	G	R	R	V	D	S	G	.	.	.	V	R	E	G	D	E	V	S	P	F	Y	D	P	M	L
Template Known Secondary structure							T	T	S				S	S		G	G	G					S									S	S		T	T	T	T	S						B		S								B	T	T							.	.	.			T	T		B			S	S	S
Template Predicted Secondary structure																																																																.	.	.
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.				420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	V	T	A	L	G	H	T	V	A	E	A	Q	K	R	A	Y	A	L	M	T	D	I	H	W	D	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	L	I	A	W	G	E	T	R	E	E	A	R	Q	R	L	L	A	M	L	A	E	T	S	V	G	G
Template Known Secondary structure									S	S																			S
Template Predicted Secondary structure
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.