Job Description P15640 Confidence 100.00% Date Wed Jan 25 15:20:39 GMT 2012 Rank 25 Aligned Residues 359 % Identity 14% Template c3orqA_ PDB info PDB header:ligase,biosynthetic protein Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide synthetase; PDBTitle: crystal structure of n5-carboxyaminoimidazole synthetase from2 staphylococcus aureus complexed with adp Resolution 2.23 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		K	V	L	V	I	G	N	G	G	R	E	H	A	L	A	W	K	A	A	Q	S	P	L	V	E	T	V	F	V	A	P	G	N	A	.	G	T	A	L	E	P	A	L	Q	N	V	A	I	G	V	T	D	I	P	A	L	L	D	F	A	Q	N	E	K	I	D	L	T	I	V	G	P	E	A	P	L	V	K	G	V
Query Conservation																																				.
Alig confidence																						.	.													.																												.	.
Template Conservation																						.	.																																									.	.
Template Sequence		T	I	G	I	I	G	G	G	Q	L	G	K	X	X	A	Q	S	A	Q	K	.	.	X	G	Y	K	V	V	V	L	D	P	S	E	D	C	P	C	R	Y	V	A	H	E	F	I	Q	A	K	Y	D	D	E	K	A	L	N	Q	L	G	Q	K	.	.	C	D	V	I	T	Y	E	F	E	N	I	S	A	Q	Q	L
Template Known Secondary structure									S													.	.	T	T								S		T	T		T	T	G	G	G	S	S							T	T												.	.		S					S	S	T	T	S
Template Predicted Secondary structure																						.	.																																									.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	T	F	R	A	A	G	L	K	I	F	G	P	T	A	G	A	A	Q	L	E	G	S	K	A	F	T	K	D	F	L	A	R	H	K	I	P	T	A	E	Y	Q	N	F	T	E	V	E	P	A	L	A	Y	L	R	E	K	G	A	P	I	V	I	K	A	D	G	L	A	A	G	K	G	V	I	V	A	M	T
Query Conservation
Alig confidence												.	.	.
Template Conservation												.	.	.
Template Sequence		K	L	L	C	E	K	Y	N	I	P	.	.	.	Q	G	Y	Q	A	I	Q	L	L	Q	D	R	L	T	E	K	E	T	L	K	S	A	G	T	K	V	V	P	F	I	S	V	K	E	S	T	D	I	D	K	A	I	E	T	L	G	Y	P	F	I	V	K	T	R	F	G	G	Y	D	G	K	G	Q	V	L	I	N
Template Known Secondary structure								S			T	.	.	.	T	T	T								S											T	T			B								S	S	T									T		S	S						S	S	S			T	T	T	T
Template Predicted Secondary structure												.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		L	E	E	A	E	A	A	V	H	D	M	L	A	G	N	A	F	G	D	A	G	H	R	I	V	I	E	E	F	L	D	G	.	E	E	A	S	F	I	V	M	V	D	G	E	H	V	L	P	M	A	T	S	Q	D	H	K	R	V	G	D	K	D	T	G	P	N	T	G	G	M	G	A	Y	S	P	A	P	V	V
Query Conservation																																		.
Alig confidence																.	.	.	.	.	.	.												.																								.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template Sequence		N	E	K	D	L	Q	E	G	F	K	L	I	E	T	.	.	.	.	.	.	.	S	E	C	V	A	E	K	Y	L	N	I	K	K	E	V	S	L	T	V	T	R	G	N	N	N	Q	I	T	F	F	P	L	Q	E	N	.	.	.	.	.	.	.	.	.	E	H	R	N	Q	I	L	F	K	T	I	V	P	A	R
Template Known Secondary structure		S	T	T	S									T	T	.	.	.	.	.	.	.	S																						G	G	G											.	.	.	.	.	.	.	.	.				T	T								S		S
Template Predicted Secondary structure																.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.								.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.										.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	D	V	H	Q	R	T	M	E	R	I	I	W	P	T	V	K	G	M	A	A	E	G	N	T	Y	T	G	F	L	Y	A	G	L	M	I	D	K	Q	G	N	P	K	V	I	E	F	N	C	R	F	G	D	P	E	T	Q	P	I	M	L	R	M	K	S	D	L	V	E	L	C	L	A	A	C	E	S	K	L
Query Conservation
Alig confidence			.	.	.	.	.																			.	.																																	.
Template Conservation			.	.	.	.	.																			.	.																																	.
Template Sequence		I	.	.	.	.	.	D	K	T	A	E	A	K	E	Q	V	N	K	I	I	Q	S	I	H	.	.	F	I	G	T	F	T	V	E	F	F	I	D	S	N	N	Q	L	Y	V	N	E	I	A	P	R	P	H	N	S	G	H	Y	.	S	I	E	A	C	D	Y	S	Q	F	D	T	H	I	L	A	V	T	G	Q	S
Template Known Secondary structure		S	.	.	.	.	.															T	T	S		.	.													T	T										S	S			G	G	G	T	T	.					B	S	S											T	T
Template Predicted Secondary structure			.	.	.	.	.																			.	.																																	.
Template SS confidence
		228						.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	K	T	S	E	W	D	E	R	A	S	L	G	V	V	M	A	A	G	G	Y	P	G	D	Y	R	T	G	D	V	I	H	G	L	P	L	E	E	V	A	G	G	K	V	F	H	A	G	T	K	L	A	D	D	E	Q	V	V	T	N	G	G	R	V	L	C	V	T	A	L	G	H	T	V	A	E	A	Q	K
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.
Template Sequence		L	P	N	S	I	E	L	L	K	P	A	V	X	X	N	L	L	.	.	.	.	.	.	.	.	.	G	K	D	L	D	L	L	E	N	E	F	N	E	H	P	E	W	H	L	H	I	Y	G	K	S	E	R	K	D	S	R	.	.	.	.	.	.	K	X	G	H	X	T	V	L	T	N	D	V	N	Q	T	E	Q
Template Known Secondary structure				S				B	S	S									.	.	.	.	.	.	.	.	.								G	G	G	G	G	G		G	G	G								S	S			T	T	S	.	.	.	.	.	.										S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.										.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.							.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	Y	A	L	M	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	X	Y	A	K	F	E
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions