 |
Job Description | P15640 | Confidence | 92.17% | Date | Wed Jan 25 15:20:39 GMT 2012 |
Rank | 238 | Aligned Residues | 117 |
% Identity | 14% | Template | c3oa2B_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:wbpb; |
PDBTitle: crystal structure of the wlba (wbpb) dehydrogenase from pseudomonas2 aeruginosa in complex with nad at 1.5 angstrom resolution
|
Resolution | 1.50 Å |
|
 |
  |   |
1 | . | |
. | . | . | . | . | |
. | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | |
|
|
|
|
|
. | . | . | . | . | 70 | . | . |
Predicted Secondary structure |   |
|  | . |  |  |  |  |
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . |
|
|  |  |  |  |
|
|
Query SS confidence |   |
|
| . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
Query Sequence |   |
M | K | . |
V | L | V | I | G | . |
N | G | G | R | E | H | A | L | A | W | K | A | A | Q | S | P | L | V | E | T | V | F | V | A | P | G | N | A | G | T | A | L | E | P | A | L | Q | N | V | A | I | G | V | T | D | I | P | A | L | L | D | F | A | Q | N | E | K | . |
. |
. |
. |
. |
. |
I | D | L | T | I | V | G | P |
Query Conservation |   |
|
| . |
|
|
|
|
| . |   |
|   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   | . | . | . | . | . | . |   |
|   |
|
|   |   |   |
Alig confidence |   |
|
| . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|
|
|   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   | . |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |
|   |
|   |
|
Template Sequence |   |
M | K | N | F | A | L | I | G | A | A | G | Y | I | A | P | R | H | M | R | A | I | K | D | T | G | N | . |
C | L | V | S | A | Y | D | I | N | D | S | V | G | I | I | D | S | I | S | P | Q | S | E | F | F | T | E | F | E | F | F | L | D | H | A | S | N | L | K | R | D | S | A | T | A | L | D | Y | V | S | I | C | S |
Template Known Secondary structure |   |
|
|  |  |  |  |  | S | T | T | S | S | S |  |  |  |  |  |  |  |  |  |  | T | T |
| . |  |  |  |  |  |  |
| S | S |
|
|
| G | G | G | G | G | T |
| T | T |
|  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  | T | T | S | T | T | T | S |
|
|  |  |  |  |
| S |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | |
. | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
  |
  |   |
73 | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | A | P | L | V | K | G | V | V | D | T | F | R | A | A | G | L | K | I | F | G | P | T | A | G | A | A | Q | L | E | G | S | K | A | F | T | K | D | F | L | A | R | H | K | I | P | T |
Query Conservation |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |
|
|
|
|
|   | . |   |
|
|
|   |
|   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
Template Sequence |   |
P | N | Y | L | H | Y | P | H | I | A | A | G | L | R | L | G | C | D | V | I | . |
C | E | K | P | L | V | P | T | P | E | M | L | D | Q | L | A | V | I | E | R | E | T | D | K | R | L |
Template Known Secondary structure |   |
| G | G | G |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  | . |  |
| S | S |
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  | . |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | |
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|