Job Description P15640 Confidence 100.00% Date Wed Jan 25 15:20:39 GMT 2012 Rank 35 Aligned Residues 295 % Identity 18% Template c3lwbA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of apo d-alanine:d-alanine ligase (ddl) from2 mycobacterium tuberculosis Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		M	K	V	L	V	I	G	N	G	G	R	E	H	A	L	A	W	K	A	A	Q	S	.	.	P	L	V	E	T	V	F	V	A	P	G	N	A	G	T	A	L	E	P	A	L	Q	N	V	A	I	G	V	T	D	I	P	A	L	L	D	F	A	Q	N	E	K	I	D	L	T	I	V	G	P	E	A	P	L	V	K
Query Conservation																								.	.
Alig confidence																								.	.																																			.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.
Template Sequence		V	R	V	A	V	V	F	G	G	A	I	S	C	V	S	A	G	S	I	L	R	N	L	D	S	R	R	F	D	V	I	A	V	G	I	T	P	A	G	S	W	V	L	T	D	A	N	V	S	L	P	P	G	A	G	E	V	L	.	.	.	.	.	.	E	S	V	D	V	V	F	P	V	L	H	G	P	Y	G	E
Template Known Secondary structure																								S		T	T	T										T	T														T	T						.	.	.	.	.	.		T		S									T	T
Template Predicted Secondary structure																																																												.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.							.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
				79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.	.																																																			.	.
Query SS confidence		.	.																																																			.	.
Query Sequence		.	.	G	V	V	D	T	F	R	A	A	G	L	K	I	F	G	P	T	A	G	A	A	Q	L	E	G	S	K	A	F	T	K	D	F	L	A	R	H	K	I	P	T	A	E	Y	Q	N	F	T	E	V	.	.	E	P	A	L	A	Y	L	R	E	K	G	A	P	I	V	I	K	A	D	G	L	A	A	G	K	G
Query Conservation		.	.																																																			.	.
Alig confidence		.	.																																																			.	.
Template Conservation
Template Sequence		D	G	T	I	Q	G	L	L	E	L	A	G	V	P	Y	V	G	A	G	V	L	A	S	A	V	G	M	D	K	E	F	T	K	K	L	L	A	A	D	G	L	P	V	G	A	Y	A	V	L	R	P	P	R	S	T	L	H	R	Q	E	C	E	R	L	G	L	P	V	F	V	K	P	A	R	G	G	S	S	I	G
Template Known Secondary structure													T			B	S	S	S										B											T	T			B								T	T														S							S	B		S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		V	I	V	A	M	T	L	E	E	A	E	A	A	V	H	D	M	L	A	G	N	A	F	G	D	A	G	H	R	I	V	I	E	E	F	L	D	G	E	E	A	S	F	I	V	M	V	D	G	E	H	V	L	P	M	A	T	S	Q	D	H	K	R	V	G	D	K	D	T	G	P	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.
Template Sequence		V	S	R	V	S	S	W	D	Q	L	P	A	A	V	A	R	A	R	R	H	.	.	.	.	.	.	D	P	K	V	I	V	E	A	A	I	S	G	R	E	L	E	C	G	V	L	E	M	P	D	G	T	L	E	A	S	T	L	G	E	I	R	V	A	G	V	R	G	R	E	D	S	F	Y	D	F	A	T	K	Y
Template Known Secondary structure							S	G	G	G										T	T	.	.	.	.	.	.		S	S																				T	T	S														S	T	T		S			S	S	S
Template Predicted Secondary structure																						.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.							.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.				.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																																																					.	.	.
Query SS confidence																																																																					.	.	.
Query Sequence		N	T	G	G	M	G	A	Y	S	P	A	P	V	V	T	D	D	V	H	Q	R	T	M	E	R	I	I	W	P	T	V	K	G	M	A	A	E	G	N	T	Y	T	G	F	L	Y	A	G	L	M	I	D	K	Q	G	N	P	K	V	I	E	F	N	C	R	F	G	.	.	.	D	P	E	T	Q	P	I	M	L	R
Query Conservation																																																																					.	.	.
Alig confidence														.	.	.	.	.																						.	.																.												.	.	.
Template Conservation														.	.	.	.	.																						.	.																.
Template Sequence		L	D	D	A	A	E	L	D	V	P	A	K	.	.	.	.	.	V	D	D	Q	V	A	E	A	I	R	Q	L	A	I	R	A	F	A	A	I	D	.	.	C	R	G	L	A	R	V	D	F	F	L	T	D	D	G	.	P	V	I	N	E	I	N	T	M	P	G	F	T	T	I	S	M	Y	P	R	M	W	A	A
Template Known Secondary structure		T		T	T					S	S			.	.	.	.	.																				T	T	.	.			S										T	T		.								S	S				S	T	T	S
Template Predicted Secondary structure														.	.	.	.	.																						.	.																.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.						290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310			.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	S	D	L	V	E	L	C	L	A	A	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	V	D	Y	P	T	L	L	A	T	M	I
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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