Job Description P15640 Confidence 100.00% Date Wed Jan 25 15:20:39 GMT 2012 Rank 15 Aligned Residues 395 % Identity 15% Template c3bg5C_ PDB info PDB header:ligase Chain: C: PDB Molecule:pyruvate carboxylase; PDBTitle: crystal structure of staphylococcus aureus pyruvate2 carboxylase Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.									.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																				.														.	.	.	.	.	.	.	.
Query SS confidence																																				.														.	.	.	.	.	.	.	.
Query Sequence		K	V	L	V	I	G	N	G	G	R	E	H	A	L	A	W	K	A	A	Q	S	P	L	V	E	T	V	F	V	A	P	G	N	A	.	G	T	A	L	E	P	A	L	Q	N	V	A	I	.	.	.	.	.	.	.	.	G	V	T	D	I	P	A	L	L	D	F	A	Q	N	E	K	I	D	L	T	I	V	G	P
Query Conservation																																				.														.	.	.	.	.	.	.	.
Alig confidence																																				.														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	L	V	A	N	R	G	E	I	A	I	R	I	F	R	A	A	A	E	L	D	I	S	T	V	A	I	Y	S	N	E	D	K	S	S	L	H	R	Y	K	A	D	E	S	Y	L	V	G	S	D	L	G	P	A	E	S	Y	L	N	I	E	R	I	I	D	V	A	K	Q	A	N	V	D	A	I	H	P	G	Y
Template Known Secondary structure						S																T	T									S	T	T	T	T		G	G	G	G	S	S	S							S	S			S	S	S	T	T	T											T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		73		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.																																																	.	.
Query SS confidence			.																																																	.	.
Query Sequence		E	.	A	P	L	V	K	G	V	V	D	T	F	R	A	A	G	L	K	I	F	G	P	T	A	G	A	A	Q	L	E	G	S	K	A	F	T	K	D	F	L	A	R	H	K	I	P	T	A	E	.	.	Y	Q	N	F	T	E	V	E	P	A	L	A	Y	L	R	E	K	G	A	P	I	V	I	K	A	D	G	L
Query Conservation			.																																																	.	.
Alig confidence			.																																																	.	.
Template Conservation
Template Sequence		G	F	L	S	E	N	E	Q	F	A	R	R	C	A	E	E	G	I	K	F	I	G	P	H	L	E	H	L	D	M	F	G	D	K	V	K	A	R	T	T	A	I	K	A	D	L	P	V	I	P	G	T	D	G	P	I	K	S	Y	E	L	A	K	E	F	A	E	E	A	G	F	P	L	M	I	K	A	T	S	G
Template Known Secondary structure		S	S	S	T	T											T	T				S	S	S									S	S											T	T			B					S	S				T	T									S	S		S							S	S
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		A	A	G	K	G	V	I	V	A	M	T	L	E	E	A	E	A	A	V	H	D	M	L	A	G	N	A	F	G	D	A	G	H	R	I	V	I	E	E	F	L	D	G	.	E	E	A	S	F	I	V	M	V	D	G	E	H	V	L	P	M	A	T	S	Q	D	H	K	R	V	G	D	K	D	T	G	P	N	T	G
Query Conservation																																													.
Alig confidence																																													.																													.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.
Template Sequence		G	G	G	K	G	M	R	I	V	R	E	E	S	E	L	E	D	A	F	H	R	A	K	S	E	A	E	K	S	F	G	N	S	E	V	Y	I	E	R	Y	I	D	N	P	K	H	I	E	V	Q	V	I	G	D	E	H	G	N	I	V	H	L	F	E	R	D	C	S	V	Q	R	R	.	.	.	.	.	.	H	Q
Template Known Secondary structure				G	G	G						S	T	T	T																S	S											S	S												T	T	S														S	S	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																																										.	.	.	.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270							.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	G	A	Y	S	P	A	P	V	V	T	D	D	V	H	Q	R	T	M	E	R	I	I	W	P	T	V	K	G	M	A	A	E	G	N	T	Y	T	G	F	L	Y	A	G	L	M	I	D	K	Q	G	N	P	K	V	I	E	F	N	C	R	F	G	D	P	E	T	Q	P	I	M	L	R	M	K	S	D	L	V
Query Conservation
Alig confidence																	.	.	.	.																	.	.																.												.
Template Conservation																	.	.	.	.																	.	.																.												.
Template Sequence		K	V	V	E	V	A	P	S	V	G	L	S	P	T	L	.	.	.	.	R	Q	R	I	C	D	A	A	I	Q	L	M	E	N	I	K	.	.	Y	V	N	A	G	T	V	E	F	L	V	S	G	D	E	.	F	F	F	I	E	V	N	P	R	V	Q	.	V	E	H	T	I	T	E	M	V	T	G	I	D	I	V
Template Known Secondary structure								S		S	S						.	.	.	.															T	T	.	.													T	T		.									S			.	T	T
Template Predicted Secondary structure																	.	.	.	.																	.	.																.												.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.					.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.					.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.						.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.																										.	.	.	.	.
Query SS confidence																	.	.	.	.																										.	.	.	.	.
Query Sequence		E	L	C	L	A	A	C	E	S	K	L	D	E	K	T	.	.	.	.	S	E	W	D	E	R	A	S	L	G	V	V	M	A	A	G	G	Y	P	G	D	Y	R	T	G	.	.	.	.	.	D	V	I	H	G	L	P	L	E	E	V	A	G	G	K	V	F	H	A	G	T	K	L	A	D	D	E	Q	V	V	T
Query Conservation																	.	.	.	.																										.	.	.	.	.
Alig confidence																	.	.	.	.																										.	.	.	.	.																				.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		K	T	Q	I	L	V	A	A	G	A	D	L	F	G	E	E	I	N	M	P	Q	Q	K	D	I	T	T	L	G	Y	A	I	Q	C	R	I	T	T	E	D	P	L	N	D	F	M	P	D	T	G	T	I	I	A	Y	R	S	S	G	G	F	G	V	R	L	D	A	G	.	.	.	D	G	F	Q	G	A	E	I	S
Template Known Secondary structure										T			T	T	S	T	T	T					G	G	G					S									S			T	T	T	T	S								S								T	T						S	.	.	.	S		S	T	T
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.				.	.	.	.	.	.	420	.	.
		380			.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		N	.	.	G	G	R	V	L	C	V	T	A	L	G	H	T	V	A	E	A	Q	K	R	A	Y	A	L	M	T	D	I	H	W	D	D	C
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		P	Y	Y	D	S	L	L	V	K	L	S	T	H	A	I	S	F	K	Q	A	E	E	K	M	V	R	S	L	R	E	M	R	I	R	G	V
Template Known Secondary structure		T	T	S												S	S																			S	S
Template Predicted Secondary structure
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.