Job Description P15640 Confidence 99.88% Date Wed Jan 25 15:20:39 GMT 2012 Rank 67 Aligned Residues 206 % Identity 17% Template c2p0aA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:synapsin-3; PDBTitle: the crystal structure of human synapsin iii (syn3) in complex with2 amppnp Resolution 1.90 Å

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		64	.	.	.	.	.	70							.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.
Query Sequence		K	I	D	L	T	I	V	.	.	.	.	.	.	G	P	E	A	P	L	V	K	G	V	V	D	T	F	R	A	A	G	L	K	I	F	G	P	T	A	G	A	A	Q	L	E	G	S	K	A	F	T	K	D	F	L	A	R	H	K	I	P	T	A	E	Y	Q	N	F	T	E	V	E	P	A	L	A	Y	L	R	E
Query Conservation									.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.																									.
Template Conservation																																							.
Template Sequence		K	P	D	F	I	L	V	R	Q	H	A	Y	S	M	A	L	G	E	D	Y	R	S	L	V	I	G	L	Q	Y	G	G	L	P	A	V	N	S	.	L	Y	S	V	Y	N	F	C	S	K	P	W	V	F	S	Q	L	I	K	I	F	H	S	L	G	P	E	K	F	P	L	V	E	Q	T	F	F	P	N	H	K	P
Template Known Secondary structure				S						S		S			G	G	G	T													T	T					S		.							T	T																		T	T	T	S		B							S	S	S	T	T
Template Predicted Secondary structure																																							.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		138					.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure			.	.	.	.
Query SS confidence			.	.	.	.
Query Sequence		K	.	.	.	.	G	A	P	I	V	I	K	A	D	G	L	A	A	G	K	G	V	I	V	A	M	T	L	E	E	A	E	A	A	V	H	D	M	L	A	G	N	A	F	G	D	A	G	H	R	I	V	I	E	E	F	L	D	G	E	E	A	S	F	I	V	M	V	D	G	E	H	V	L	P	M	A	T	S	Q
Query Conservation			.	.	.	.
Alig confidence			.	.	.	.																																					.	.	.	.	.	.														.																			.
Template Conservation																																											.	.	.	.	.	.														.																			.
Template Sequence		M	V	T	A	P	H	F	P	V	V	V	K	L	G	H	A	H	A	G	M	G	K	I	K	V	E	N	Q	L	D	F	Q	D	I	T	S	V	V	A	M	A	.	.	.	.	.	.	K	T	Y	A	T	T	E	A	F	I	D	S	K	.	Y	D	I	R	I	Q	K	I	G	S	N	Y	K	A	Y	M	R	T	.
Template Known Secondary structure						S	S	S	S						S	S			T	T	T	T						S															.	.	.	.	.	.	T													.									T	T									.
Template Predicted Secondary structure																																											.	.	.	.	.	.														.																			.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.							.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.					.
Predicted Secondary structure																																																																													.	.	.	.
Query SS confidence																																																																													.	.	.	.
Query Sequence		D	H	K	R	V	G	D	K	D	T	G	P	N	T	G	G	M	G	A	Y	S	P	A	P	V	V	T	D	D	V	H	Q	R	T	M	E	R	I	I	W	P	T	V	K	G	M	A	A	E	G	N	T	Y	T	G	F	L	Y	A	G	L	M	I	D	K	Q	G	N	P	K	V	I	E	F	N	.	.	.	.	C
Query Conservation																																																																													.	.	.	.
Alig confidence		.	.												.											.	.	.	.	.	.	.	.	.	.	.																.	.																								.	.	.	.
Template Conservation		.	.												.											.	.	.	.	.	.	.	.	.	.	.																.	.
Template Sequence		.	.	S	I	S	G	N	W	K	A	N	T	G	.	S	A	M	L	E	Q	V	A	M	T	.	.	.	.	.	.	.	.	.	.	.	E	R	Y	R	L	W	V	D	S	C	S	E	M	F	G	.	.	G	L	D	I	C	A	V	K	A	V	H	S	K	D	G	R	D	Y	I	I	E	V	M	D	S	S	M	P
Template Known Secondary structure		.	.		S	S	S		S	S	T	T	S	S	.	S										.	.	.	.	.	.	.	.	.	.	.											T	T	G	G	G	.	.			S										T	T	S										T	T
Template Predicted Secondary structure		.	.												.											.	.	.	.	.	.	.	.	.	.	.																.	.
Template SS confidence
				309	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.												330	.	.	.	.	.	.	.	.	.	340	.	.	.	.			.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	G	D	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	G	E	H
Template Known Secondary structure				G	G	G
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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