Job Description P15640 Confidence 100.00% Date Wed Jan 25 15:20:39 GMT 2012 Rank 36 Aligned Residues 291 % Identity 12% Template c2i80B_ PDB info PDB header:ligase Chain: B: PDB Molecule:d-alanine-d-alanine ligase; PDBTitle: allosteric inhibition of staphylococcus aureus d-alanine:d-alanine2 ligase revealed by crystallographic studies Resolution 2.19 Å

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		2	.	.	.	.	.	.	.	10	.										.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.												.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	L	V	I	G	N	G	G	R	.	.	.	.	.	.	.	.	.	E	H	A	L	A	W	K	A	A	Q	S	P	L	V	E	T	V	F	V	A	P	G	N	A	G	T	A	L	E	P	A	L	Q	.	.	.	.	.	.	.	.	.	.	.	N	V	A	I	G	V	T	D	I	P	A	L	L	D	F	A	Q
Query Conservation												.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	C	I	V	F	G	G	K	S	A	E	H	E	V	S	I	L	T	A	Q	N	V	L	N	A	I	D	K	D	K	Y	H	V	D	I	I	Y	I	T	N	D	G	D	W	R	K	Q	N	N	I	T	A	E	I	K	S	T	D	E	L	H	L	E	N	G	E	A	L	E	I	S	Q	L	L	K	E	S	S	S
Template Known Secondary structure										S	S	T	T															S		T	T	T										T	T	S										S					G	G	G	G	S		S					S										T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.								.	.	.	130	.	.
Predicted Secondary structure																			.	.																																																	.	.	.	.	.	.	.
Query SS confidence																			.	.																																																	.	.	.	.	.	.	.
Query Sequence		N	E	K	I	D	L	T	I	V	G	P	E	A	P	L	V	K	.	.	G	V	V	D	T	F	R	A	A	G	L	K	I	F	G	P	T	A	G	A	A	Q	L	E	G	S	K	A	F	T	K	D	F	L	A	R	H	K	I	P	T	A	E	Y	Q	N	F	T	.	.	.	.	.	.	.	E	V	E	P	A	L
Query Conservation																			.	.																																																	.	.	.	.	.	.	.
Alig confidence																			.	.																																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Q	P	Y	D	A	V	F	P	L	L	H	G	P	N	G	E	D	G	T	I	Q	G	L	F	E	V	L	D	V	P	Y	V	G	N	G	V	L	S	A	A	S	S	M	D	K	L	V	M	K	Q	L	F	E	H	R	G	L	P	Q	L	P	Y	I	S	F	L	R	S	E	Y	E	K	Y	E	H	N	I	L	K
Template Known Secondary structure		S	S			S						S		B	T	T	T	B	S	S										T			B	S	S																							T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	L	R	E	K	G	A	P	I	V	I	K	A	D	G	L	A	A	G	K	G	V	I	V	A	M	T	L	E	E	A	E	A	A	V	H	D	M	L	A	G	N	A	F	G	D	A	G	H	R	I	V	I	E	E	F	L	D	G	E	E	A	S	F	I	V	M	V	D	G	E	H	V	L	P	M	A	T	S
Query Conservation
Alig confidence																																												.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.
Template Sequence		L	V	N	D	K	L	N	Y	P	V	F	V	K	P	A	N	L	G	S	S	V	G	I	S	K	C	N	N	E	A	E	L	K	E	G	I	K	E	A	F	Q	F	.	.	.	.	.	.	D	R	K	L	V	I	E	Q	G	V	N	A	R	E	I	E	V	A	V	L	G	N	D	Y	P	E	A	T	W	P	G	E
Template Known Secondary structure									S	S						T	T		S	S		T	T					S	S													T	T	.	.	.	.	.	.		S																				S	S	S
Template Predicted Secondary structure																																												.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.							.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	H	K	R	V	G	D	K	D	T	G	P	N	T	G	G	M	G	A	Y	S	P	A	P	V	V	T	D	D	V	H	Q	R	T	M	E	R	I	I	W	P	T	V	K	G	M	A	A	E	G	N	T	Y	T	G	F	L	Y	A	G	L	M	I	D	K	Q	G	N	P	K	V	I	E	F	N	C	R	F	G
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																					.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																					.	.
Template Sequence		V	.	.	.	.	.	.	.	.	.	.	V	K	D	V	A	F	V	Q	L	Q	I	P	A	D	L	.	.	.	.	.	D	E	D	V	Q	L	T	L	R	N	M	A	L	E	A	F	K	A	T	D	.	.	C	S	G	L	V	R	A	D	F	F	V	T	E	D	N	Q	I	Y	I	N	E	T	N	A	M	P	G
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.			S	S							S	S		S		.	.	.	.	.																			T	T	.	.													T	T										S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.																.	.	.	.	.																					.	.
Template SS confidence
		239											240	.	.	.	.	.	.	.	.	.	250	.	.	.	.						.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
					293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	D	P	E	T	Q	P	I	M	L	R	M	K	S	D	L	V	E	L	C	L	A	A	C
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		F	T	A	F	S	M	Y	P	K	L	W	E	N	M	G	L	S	Y	P	E	L	I	T	K	L	I
Template Known Secondary structure			S	T	T	S									T	T
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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