Job Description P15640 Confidence 100.00% Date Wed Jan 25 15:20:39 GMT 2012 Rank 8 Aligned Residues 390 % Identity 35% Template c1vkzA_ PDB info PDB header:ligase Chain: A: PDB Molecule:phosphoribosylamine--glycine ligase; PDBTitle: crystal structure of phosphoribosylamine--glycine ligase (tm1250) from2 thermotoga maritima at 2.30 a resolution Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	V	L	V	I	G	N	G	G	R	E	H	A	L	A	W	K	A	A	Q	S	P	L	V	E	T	V	F	V	A	P	G	N	A	G	T	A	L	E	P	A	L	Q	N	V	A	I	G	V	T	D	I	P	A	L	L	D	F	A	Q	N	E	K	I	D	L	T	I	V	G	P	E	A	P	L	V	K	G	V
Query Conservation
Alig confidence																								.	.																	.	.	.	.	.																	.	.												.	.	.	.	.	.
Template Conservation																								.	.																	.	.	.	.	.																	.	.												.	.	.	.	.	.
Template Sequence		V	R	V	H	I	L	G	S	G	G	R	E	H	A	I	G	W	A	F	A	K	Q	.	.	G	Y	E	V	H	F	Y	P	G	N	A	G	T	K	R	D	.	.	.	.	.	G	T	N	H	P	Y	E	G	E	K	T	L	K	A	I	P	.	.	E	E	D	I	V	I	P	G	S	E	E	.	.	.	.	.	.
Template Known Secondary structure										S													T	.	.	T										T	T	G	G	G	T	.	.	.	.	.	S							T						T	S		.	.	S	S						S	S	G	G	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.																	.	.	.	.	.																	.	.												.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	T	F	R	A	A	G	L	K	I	F	G	P	T	A	G	A	A	Q	L	E	G	S	K	A	F	T	K	D	F	L	A	R	H	K	I	P	T	A	E	Y	Q	N	F	T	E	V	E	P	A	L	A	Y	L	R	E	K	G	A	P	I	V	I	K	A	D	G	L	A	A	G	K	G	V	I	V	A	M	T
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	F	L	V	E	R	S	N	V	F	G	P	V	K	E	V	A	R	L	E	G	S	K	V	Y	A	K	R	F	X	K	K	Y	G	I	R	T	A	R	F	E	V	A	E	T	P	E	E	L	R	E	K	I	K	K	F	S	P	P	Y	V	I	K	A	D	G	L	A	R	G	K	G	V	L	I	L	D	S
Template Known Secondary structure		.	.	.	G	T				T	T	B	S	S																						T	T										S	S									T	T	S		S	S						S	S			S	S							S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	E	A	E	A	A	V	H	D	M	L	A	G	N	A	F	G	D	A	G	H	R	I	V	I	E	E	F	L	D	G	E	E	A	S	F	I	V	M	V	D	G	E	H	V	L	P	M	A	T	S	Q	D	H	K	R	V	G	D	K	D	T	G	P	N	T	G	G	M	G	A	Y	S	P	A	P	V	V	T
Query Conservation
Alig confidence																																																																																.	.
Template Conservation																																																																																.	.
Template Sequence		K	E	E	T	I	E	K	G	S	K	L	I	I	G	E	L	I	K	G	V	K	G	P	V	V	I	D	E	F	L	A	G	N	E	L	S	A	X	A	V	V	N	G	R	N	F	V	I	L	P	F	V	R	D	Y	K	R	L	X	D	G	D	R	G	P	N	T	G	G	X	G	S	W	G	P	V	E	I	.	.
Template Known Secondary structure															T	S	S	S	T	T			S										S											T	T																T	T	T						S		S									.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	V	H	Q	R	T	M	E	R	I	I	W	P	T	V	K	G	M	A	A	E	G	N	T	Y	T	G	F	L	Y	A	G	L	M	I	D	K	Q	G	N	P	K	V	I	E	F	N	C	R	F	G	D	P	E	T	Q	P	I	M	L	R	M	K	S	D	L	V	E	L	C	L	A	A	C	E	S	K	L	D
Query Conservation
Alig confidence																																										.
Template Conservation																																										.
Template Sequence		P	S	D	T	I	K	K	I	E	E	L	F	D	K	T	L	W	G	V	E	K	E	G	Y	A	Y	R	G	F	L	Y	L	G	L	X	L	H	D	G	D	.	P	Y	I	L	E	Y	N	V	R	L	G	D	P	E	T	E	V	I	V	T	L	N	P	E	G	F	V	N	A	V	L	E	G	Y	R	G	G	K	X
Template Known Secondary structure																							T	T															T	T		.								S	S			T	T																							T	S
Template Predicted Secondary structure																																										.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	T	S	E	W	D	E	R	A	S	L	G	V	V	M	A	A	G	G	Y	P	G	D	Y	R	T	G	D	V	I	H	G	L	P	L	E	E	V	A	G	G	K	V	F	H	A	G	T	K	L	A	D	D	E	Q	V	V	T	N	G	G	R	V	L	C	V	T	A	L	G	H	T	V	A	E	A	Q	K	R
Query Conservation
Alig confidence				.	.																															.	.	.	.	.														.
Template Conservation				.	.																															.	.	.	.	.														.
Template Sequence		E	P	.	.	V	E	P	R	G	F	A	V	D	V	V	L	A	A	R	G	Y	P	D	A	P	E	K	G	K	E	I	T	L	P	.	.	.	.	.	E	E	G	L	I	F	F	A	G	V	A	E	K	.	D	G	K	L	V	T	N	G	G	R	V	L	H	C	X	G	T	G	E	T	K	E	E	A	R	R	K
Template Known Secondary structure				.	.					S										T	T	T	T	T	S						B		B			.	.	.	.	.	S	S						S	S					.	T	T						S	S										S	S
Template Predicted Secondary structure				.	.																															.	.	.	.	.														.
Template SS confidence
		308	.			310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.						340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	A	L	M	T	D	I	H	W	D	D	C	F	C	R	K	D	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Y	E	L	A	E	K	V	H	F	E	G	K	T	Y	R	R	D	I
Template Known Secondary structure										B		T	T		B			T	T
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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