Job Description P15640 Confidence 99.90% Date Wed Jan 25 15:20:39 GMT 2012 Rank 64 Aligned Residues 229 % Identity 13% Template c1pk8D_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:rat synapsin i; PDBTitle: crystal structure of rat synapsin i c domain complexed to2 ca.atp Resolution 2.10 Å

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		61	.	.	.	.	.	.	.	.	70							.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130
Predicted Secondary structure												.	.	.	.	.	.																																																											.	.	.	.
Query SS confidence												.	.	.	.	.	.																																																											.	.	.	.
Query Sequence		Q	N	E	K	I	D	L	T	I	V	.	.	.	.	.	.	G	P	E	A	P	L	V	K	G	V	V	D	T	F	R	A	A	G	L	K	I	F	G	P	T	A	G	A	A	Q	L	E	G	S	K	A	F	T	K	D	F	L	A	R	H	K	I	P	T	A	E	Y	Q	N	F	T	E	V	.	.	.	.	E	P
Query Conservation												.	.	.	.	.	.																																																											.	.	.	.
Alig confidence												.	.	.	.	.	.																									.																																		.	.	.	.
Template Conservation																																										.
Template Sequence		R	S	L	K	P	D	F	V	L	I	R	Q	H	A	F	S	M	A	R	N	G	D	Y	R	S	L	V	I	G	L	Q	Y	A	G	I	P	S	V	N	S	.	L	H	S	V	Y	N	F	C	D	K	P	W	V	F	A	Q	M	V	R	L	H	K	K	L	G	T	E	E	F	P	L	I	D	Q	T	F	Y	P	N
Template Known Secondary structure							S						S		S			S	S	T	T													T	T					S		.							T	S	S																	T	T	T			B							S	S
Template Predicted Secondary structure																																										.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		A	L	A	Y	L	R	E	K	G	A	P	I	V	I	K	A	D	G	L	A	A	G	K	G	V	I	V	A	M	T	L	E	E	A	E	A	A	V	H	D	M	L	A	G	N	A	F	G	D	A	G	H	R	I	V	I	E	E	F	L	D	.	G	E	E	A	S	F	I	V	M	V	D	G	E	H	V	L	P	M
Query Conservation																																																															.
Alig confidence																																														.	.	.	.	.	.												.										.	.
Template Conservation																																														.	.	.	.	.	.																						.	.
Template Sequence		H	K	E	M	L	S	S	T	T	Y	P	V	V	V	K	M	G	H	A	H	S	G	M	G	K	V	K	V	D	N	Q	H	D	F	Q	D	I	A	S	V	V	A	L	T	.	.	.	.	.	.	K	T	Y	A	T	A	E	P	F	I	D	A	K	Y	D	V	R	V	Q	K	I	.	.	G	Q	N	Y	K	A	Y
Template Known Secondary structure		G	G	G					S	S	S	S						S	S			T	T	T	T						S															.	.	.	.	.	.	T	S																				.	.	T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.																						.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.							.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.			320	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		A	T	S	Q	D	H	K	R	V	G	D	K	D	T	G	P	N	T	G	G	M	G	A	Y	S	P	A	P	V	V	T	D	D	V	H	Q	R	T	M	E	R	I	I	W	P	T	V	K	G	M	A	A	E	G	N	T	Y	T	G	F	L	Y	A	G	L	M	I	D	K	Q	G	N	P	K	V	I	E	F	N	.
Query Conservation																																																																																	.
Alig confidence			.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.																	.	.																								.
Template Conservation			.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.																	.	.
Template Sequence		M	.	.	.	.	.	R	T	S	V	S	G	N	W	K	T	N	T	G	S	A	M	L	E	Q	I	A	M	.	.	.	.	.	.	.	.	.	.	S	D	R	Y	K	L	W	V	D	T	C	S	E	I	F	G	.	.	G	L	D	I	C	A	V	E	A	L	H	G	K	D	G	R	D	H	I	I	E	V	V	G
Template Known Secondary structure			.	.	.	.	.				S	S	S		S	S	T	T	S	S	S									.	.	.	.	.	.	.	.	.	.												T	T	G	G	G	.	.			S										T	T	S
Template Predicted Secondary structure			.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.																	.	.
Template SS confidence
		327						.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.											350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.			.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
			289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	C	R	F	G	D	P	E	T	Q	P	I	M	L	R	M	K	S	D	L	V	E	L	C	L	A	A	C
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		S	S	M	P	L	I	G	D	H	Q	D	E	D	K	Q	L	I	V	E	L	V	V	N	K	M	T	Q	A
Template Known Secondary structure		T	T					S	T	T
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions