Job Description P15640 Confidence 100.00% Date Wed Jan 25 15:20:39 GMT 2012 Rank 16 Aligned Residues 372 % Identity 20% Template c1m6vE_ PDB info PDB header:ligase Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain; PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase Resolution 2.10 Å

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		2	.	.	.	.	.	.	.												10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.																													.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.																													.	.
Query Sequence		K	V	L	V	I	G	N	G	.	.	.	.	.	.	.	.	.	.	.	G	R	E	H	A	L	A	W	K	A	A	Q	S	P	L	V	E	T	V	F	V	A	P	G	N	A	G	T	.	.	A	L	E	P	A	L	Q	N	V	A	I	G	V	T	D	I	P	A	L	L	D	F	A	Q	N	E	K	I	D	L	T
Query Conservation										.	.	.	.	.	.	.	.	.	.	.																													.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.													.	.															.	.
Template Conservation																																	.	.
Template Sequence		S	I	L	I	L	G	A	G	P	I	V	I	G	Q	A	C	E	F	D	Y	S	G	A	Q	A	C	K	A	L	R	E	.	.	E	G	Y	R	V	I	N	V	N	S	N	P	A	T	I	M	T	D	P	E	M	A	D	A	T	Y	I	E	P	I	H	W	E	V	V	R	K	I	I	E	K	E	R	P	D	A	V
Template Known Secondary structure										S		B	T	T	B		T																.	.	T	T								S		S	S		G	G	G		G	G	G		S																						S
Template Predicted Secondary structure																																	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.							.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.
Query Sequence		I	V	G	P	E	A	P	L	V	K	G	V	V	D	T	.	.	.	.	.	.	F	R	A	A	G	L	K	I	F	G	P	T	A	G	A	A	Q	L	E	G	S	K	A	F	T	K	D	F	L	A	R	H	K	I	P	T	A	E	Y	Q	N	F	T	E	V	E	P	A	L	A	Y	L	R	E	K	G	A	P	I
Query Conservation																	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	T	M	G	G	Q	T	A	L	N	C	A	L	E	L	E	R	Q	G	V	L	E	E	F	G	V	T	M	I	G	A	T	A	D	A	I	D	K	A	E	D	R	R	R	F	D	V	A	M	K	K	I	G	L	E	T	A	R	S	G	I	A	H	T	M	E	E	A	L	A	V	A	A	D	V	G	F	P	C
Template Known Secondary structure				S	S	S														T	T					T	T					S	S										S												T					S					S	S													S	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		V	I	K	A	D	G	L	A	A	G	K	G	V	I	V	A	M	T	L	E	E	A	E	A	A	V	H	D	M	L	A	G	N	A	F	G	D	A	G	H	R	I	V	I	E	E	F	L	D	G	.	E	E	A	S	F	I	V	M	V	D	G	E	H	V	L	P	M	A	T	S	Q	D	H	K	R	V	G	D	K
Query Conservation																																																				.
Alig confidence																																			.	.	.	.														.																								.	.	.	.
Template Conservation																																			.	.	.	.																																						.	.	.	.
Template Sequence		I	I	R	P	S	F	T	M	G	G	S	G	G	G	I	A	Y	N	R	E	E	F	E	E	I	C	A	R	G	L	D	L	S	.	.	.	.	P	T	K	E	L	L	I	D	E	S	L	I	G	W	K	E	Y	E	M	E	V	V	R	D	K	N	D	N	C	I	I	V	C	S	I	E	N	.	.	.	.	F	D
Template Known Secondary structure						T	T			T	T	T	T					S	S																.	.	.	.	T	T										T	T	S											T	T												.	.	.	.	S	S
Template Predicted Secondary structure																																			.	.	.	.																																						.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.					200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.					.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		D	T	G	P	N	T	G	G	M	G	A	Y	S	P	A	P	V	V	T	D	D	V	H	Q	R	T	M	E	R	I	I	W	P	T	V	K	G	M	A	A	E	G	N	T	Y	T	G	F	L	Y	A	G	L	M	I	D	.	K	Q	G	N	P	K	V	I	E	F	N	C	R	F	G	D	P	E	T	Q	P	I	M
Query Conservation																																																										.
Alig confidence																								.	.	.	.																			.												.																		.
Template Conservation																								.	.	.	.																			.																														.
Template Sequence		A	M	G	I	H	T	G	D	S	I	T	V	A	P	A	Q	T	L	T	D	K	E	.	.	.	.	Y	Q	I	M	R	N	A	S	M	A	V	L	R	E	I	G	V	E	.	T	G	G	S	N	V	Q	F	A	V	N	P	K	N	G	R	L	I	V	I	E	M	N	P	R	V	S	R	S	.	S	A	L	A	S
Template Known Secondary structure			T	T	S		G	G	G	S					S			S						.	.	.	.																T			.	S											T	T	T	T									S	S					.
Template Predicted Secondary structure																								.	.	.	.																			.																														.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260					.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.											.
Query SS confidence																			.											.
Query Sequence		L	R	M	K	S	D	L	V	E	L	C	L	A	A	C	E	S	.	K	L	D	E	K	T	S	E	W	D	.	E	R	A	S	L	G	V	V	M	A	A	G	G	Y	P	G	D	Y	R	T	G	D	V	I	H	G	L	P	L	E	E	V	A	G	G	K	V	F	H	A	G	T	K	L	A	D	D	E	Q	V	V
Query Conservation																			.											.
Alig confidence																			.											.							.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Sequence		K	A	T	G	F	P	I	A	K	V	A	A	K	L	A	V	G	Y	T	L	D	E	L	M	N	D	I	T	G	G	R	T	P	A	S	.	.	.	.	.	.	.	.	.	F	E	P	S	I	D	Y	V	V	T	K	I	P	R	F	N	F	E	K	.	.	.	.	F	A	G	A	N	D	R	L	T	T	Q	M	K
Template Known Secondary structure					S											T	T	T			G	G	G	S	B		G	G	G	T	T	S	S	B	S		.	.	.	.	.	.	.	.	.	S			B		S	S										G	G	G	.	.	.	.		T	T				B			S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.																				.	.	.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.										.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.					.	.	.	370	.	.	.	.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	G	G	R	V	L	C	V	T	A	L	G	H	T	V	A	E	A	Q	K	R	A	Y	A	L	M	T
Query Conservation
Alig confidence					.	.	.	.
Template Conservation					.	.	.	.
Template Sequence		S	V	G	.	.	.	.	E	V	M	A	I	G	R	T	Q	Q	E	S	L	Q	K	A	L	R	G	L	E
Template Known Secondary structure					.	.	.	.							S	S										T	T	S
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
		380	.	.					.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.