Job Description P15640 Confidence 99.90% Date Wed Jan 25 15:20:39 GMT 2012 Rank 65 Aligned Residues 232 % Identity 11% Template c1i7nA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:synapsin ii; PDBTitle: crystal structure analysis of the c domain of synapsin ii2 from rat brain Resolution 1.90 Å

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		61	.	.	.	.	.	.	.	.	70	.							.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130
Predicted Secondary structure													.	.	.	.	.	.																																																										.	.	.	.
Query SS confidence													.	.	.	.	.	.																																																										.	.	.	.
Query Sequence		Q	N	E	K	I	D	L	T	I	V	G	.	.	.	.	.	.	P	E	A	P	L	V	K	G	V	V	D	T	F	R	A	A	G	L	K	I	F	G	P	T	A	G	A	A	Q	L	E	G	S	K	A	F	T	K	D	F	L	A	R	H	K	I	P	T	A	E	Y	Q	N	F	T	E	V	.	.	.	.	E	P
Query Conservation													.	.	.	.	.	.																																																										.	.	.	.
Alig confidence													.	.	.	.	.	.																						.																																				.	.	.	.
Template Conservation																																								.
Template Sequence		R	S	F	R	P	D	F	V	L	I	R	Q	H	A	F	G	M	A	E	N	E	D	F	R	H	L	V	I	G	M	Q	Y	A	G	L	P	S	I	.	N	S	L	E	S	I	Y	N	F	C	D	K	P	W	V	F	A	Q	M	V	A	I	F	K	T	L	G	G	E	K	F	P	L	I	E	Q	T	Y	Y	P	N
Template Known Secondary structure							S						S					S	S	T	T													T	T					.	S								T	S	S																	T	T	T	S		B							S	S
Template Predicted Secondary structure																																								.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		A	L	A	Y	L	R	E	K	G	A	P	I	V	I	K	A	D	G	L	A	A	G	K	G	V	I	V	A	M	T	L	E	E	A	E	A	A	V	H	D	M	L	A	G	N	A	F	G	D	A	G	H	R	I	V	I	E	E	F	L	D	.	G	E	E	A	S	F	I	V	M	V	D	G	E	H	V	L	P	M
Query Conservation																																																															.
Alig confidence																																														.	.	.	.	.	.												.													.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.																									.	.	.	.	.
Template Sequence		H	R	E	M	L	T	L	P	T	F	P	V	V	V	K	I	G	H	A	H	S	G	M	G	K	V	K	V	E	N	H	Y	D	F	Q	D	I	A	S	V	V	A	L	T	.	.	.	.	.	.	Q	T	Y	A	T	A	E	P	F	I	D	A	K	Y	D	I	R	V	Q	K	I	G	N	N	.	.	.	.	.	Y
Template Known Secondary structure		G	G	G	G	S	S				S	S						S	S		S	T	T	T	T						S															.	.	.	.	.	.	T																					T	T		.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.																									.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.							300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.						.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	S	Q	D	H	K	R	V	G	D	K	D	T	G	P	N	T	G	G	M	G	A	Y	S	P	A	P	V	V	T	D	D	V	H	Q	R	T	M	E	R	I	I	W	P	T	V	K	G	M	A	A	E	G	N	T	Y	T	G	F	L	Y	A	G	L	M	I	D	K	Q	G	N	P	K	V	I	E	F	N	C
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Sequence		K	A	Y	M	R	T	S	I	S	G	N	W	K	T	N	T	G	S	A	M	L	E	Q	I	A	M	S	.	.	.	.	.	.	.	.	.	.	.	.	D	R	Y	K	L	W	V	D	A	C	S	E	M	F	G	.	.	G	L	D	I	C	A	V	K	A	V	H	G	K	D	G	K	D	Y	I	F	E	V	M	D
Template Known Secondary structure								S	S		T	T	T	S		S				S	S								.	.	.	.	.	.	.	.	.	.	.	.											T	T	G	G	G	.	.			S										T	T	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.													.	.	.	.	.	.	.	.	360	.	.	.	.	.	.			.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	G	D	P	E	T	Q	P	I	M	L	R	M	K	S	D	L	V	E	L	C	L	A	A	C	E	S	K	L
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		C	S	M	P	L	I	G	E	.	H	Q	V	E	D	R	Q	L	I	T	D	L	V	I	S	K	M	N	Q	L	L
Template Known Secondary structure		T	T					S	S	.
Template Predicted Secondary structure										.
Template SS confidence
		391	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions